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Sample GSM224623 Query DataSets for GSM224623
Status Public on Jun 27, 2008
Title T2_TG1_CD29HCD24L
Sample type RNA
 
Source name mammary tumor
Organism Mus musculus
Characteristics Balb/C
Extracted molecule total RNA
Extraction protocol PicoPure RNA isolation kit
Label Biotin
Label protocol mRNA amplification and labeling using a T7 global amplification method (Two-cycle Target Labeling kit; Affymetrix)
 
Hybridization protocol Affymetrix Hybridization
Scan protocol GeneChip Scanner
Description For tumors: TG1 means transplantation generation 1. H means high, L means low. Therefore, CD29HCD24H means CD29 high, CD24 high; CD29HCD24L means CD29 high, CD24 low; CD29LCD24H means CD29 low, CD24 high; CD29LCD24L means CD29 low, CD24 low.

For normal: MEC means mammary epithelial cell. CD29highCD24positive from normal MEC is shortened to CD29HCD24P(MEC), CD29positiveCD24high from normal is shortened to CD29PCD24H(MEC), and CD24low from normal is shortened to CD24L(MEC).
Data processing GCOS-calculated probe set signal intensities
 
Submission date Aug 23, 2007
Last update date Aug 28, 2018
Contact name Mei Zhang
Organization name Baylor College of Medicine
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL1261
Series (1)
GSE8863 Mouse mammary tumor-initiating cells
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE GCOS
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1281.25 P 0.000855711
AFFX-BioB-M_at 1431.15 P 0.000753643
AFFX-BioB-3_at 1086.47 P 8.14279e-05
AFFX-BioC-5_at 3311.14 P 0.000296708
AFFX-BioC-3_at 3488.23 P 6.02111e-05
AFFX-BioDn-5_at 7133.62 P 4.42873e-05
AFFX-BioDn-3_at 13364 P 0.000224668
AFFX-CreX-5_at 35985.5 P 5.16732e-05
AFFX-CreX-3_at 41211.9 P 4.42873e-05
AFFX-DapX-5_at 19.0585 A 0.340661
AFFX-DapX-M_at 43.4173 A 0.275146
AFFX-DapX-3_at 45.1263 A 0.470241
AFFX-LysX-5_at 11.434 A 0.396884
AFFX-LysX-M_at 18.6912 A 0.749204
AFFX-LysX-3_at 7.78537 A 0.300606
AFFX-PheX-5_at 4.4428 A 0.953518
AFFX-PheX-M_at 5.24162 A 0.883887
AFFX-PheX-3_at 42.3498 A 0.455413
AFFX-ThrX-5_at 29.0399 A 0.52976
AFFX-ThrX-M_at 17.4554 A 0.686277

Total number of rows: 45101

Table truncated, full table size 1364 Kbytes.




Supplementary file Size Download File type/resource
GSM224623.CEL.gz 3.9 Mb (ftp)(http) CEL
GSM224623.CHP.gz 245.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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