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GEO accession:
Sample GSM22463
Query DataSets for GSM22463
Status
Public on Jun 07, 2004
Title
whole tissue section from case 374
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 374 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=374;Tumor.type=D;Size=1;Grade=3;Nodes=0/15;ER=Pos (<10%);PR=Pos;HER2=Pos;Age=57;DFS=47;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.4848783
4816.0
5400.0
0.7145575999496863
6459
-0.9087993
1062.0
628.0
0.5326281748736942
16790
0.7139813
295.0
501.5
1.6403243808108963
4210
0.0666423
150.0
156.0
1.0472765413377592
13392
0.3147653
4652.0
9602.0
1.2438092578410118
1575
0.4212633
151.5
202.5
1.3390997235275
9300
0.7547343
308.5
541.0
1.6873201742249835
5306
0.0995423
167.0
178.5
1.071433582632535
4514
-0.0424693
128.5
123.0
0.9709918438833482
8664
2.0455163
167.0
711.0
4.128208770673837
1645
0.1440593
301.5
342.5
1.1050094030678224
13828
1.9596763
136.5
541.0
3.8897463376841324
3944
-0.0669863
147.0
139.0
0.9546304517296084
500
0.0532613
2878.5
4334.5
1.0376074209180808
21226
0.0028203
216.0
218.0
1.0019566398895738
15545
-1.5771663
2117.5
853.5
0.33513957177767284
6346
0.6153973
537.0
893.5
1.5319795741062354
4381
0.1377353
115.0
124.5
1.1001765783058617
3385
1.9473193
5138.0
35403.0
3.856572138369846
19553
0.1338693
130.0
141.0
1.0972324353710114
Total number of rows:
22575
Table truncated, full table size
1066 Kbytes
.
Supplementary data files not provided
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