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GEO accession:
Sample GSM22464
Query DataSets for GSM22464
Status
Public on Jun 07, 2004
Title
whole tissue section from case 420
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 420 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=420;Tumor.type=D/L;Size=2;Grade=3;Nodes=ND;ER=Pos;PR=Pos;HER2=Neg;Age=72;DFS=58;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.3921313
3793.0
8503.0
1.312330014212865
6459
-0.5251133
810.5
553.5
0.694904757924522
16790
-0.7846673
200.5
93.0
0.5804861212377952
4210
0.1866423
148.0
135.0
1.138111547478172
13392
0.0763463
2993.0
4940.0
1.0543444064029794
1575
0.0673053
171.0
145.0
1.0477574496712942
9300
0.0685943
213.0
185.0
1.0486940597922065
5306
0.2253563
177.5
169.5
1.169065423130952
4514
0.0213803
146.0
118.0
1.014930183505924
8664
0.3409793
164.0
169.0
1.2666157157448852
1645
0.0360443
207.0
175.0
1.0252987150614647
13828
0.3821373
154.0
162.5
1.3032712410453733
3944
0.0528363
192.0
163.0
1.0373022542029584
500
-0.8873663
1857.0
1217.0
0.5406003515805545
21226
0.6923893
199.0
271.0
1.6159569707096608
15545
-1.5748863
1431.0
495.0
0.335669620643078
6346
0.2908073
379.5
419.0
1.2233240556302833
4381
0.0046843
176.0
143.0
1.0032520666073677
3385
-0.3056923
3605.0
4638.5
0.8090539504619974
19553
1.9868573
145.5
494.0
3.963724808447397
Total number of rows:
22575
Table truncated, full table size
1059 Kbytes
.
Supplementary data files not provided
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