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Sample GSM224666 Query DataSets for GSM224666
Status Public on Dec 01, 2007
Title Liver_C_week2
Sample type RNA
Source name Liver, control
Organism Mus musculus
Characteristics C57/BL6J
Female mice
Biomaterial provider Animal Holding Unit, National University Singapore
Treatment protocol Liver samples comprising identical lobes were quickly removed from each mouse. The liver samples were immediately snap-frozen in liquid nitrogen and stored at -80┬░C.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from the frozen liver tissue of each mouse using Trizol reagent (Life Technologies, 15596-018) and purified using RNeasy Mini Kit (Qiagen, 74104), according to manufacturer's protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared using the Genechip IVT Labelling Kit (Affymetrix, 900182), according to manufacturer's protocol.
Hybridization protocol Following fragmentation, the labeled cRNA were hybridized to the Affymetrix GeneChip® Mouse Genome 430 2.0 chip according to the protocol provided by the manufacturer.
Scan protocol GeneChips were scanned using the Agilent GeneArray Scanner G2500A
Description Liver tissue from C57BL/6J mice fed on control diet
Data processing The GeneChip Operating Software Version (Affymetrix) was used to analyze the scanned image. The normalization target was set to 500.
Submission date Aug 24, 2007
Last update date Dec 29, 2011
Contact name Mei Yen Chan
Organization name Yong Loo Lin School of Medicine, National University of Singapore
Department Pediatrics
Lab Cardiovascular Genetics
Street address 5 Lower Kent Ridge Road
City Singapore
State/province Singapore
ZIP/Postal code 119074
Country Singapore
Platform ID GPL339
Series (1)
GSE8753 Sequential responses to high-fat feeding in an obese mouse model

Data table header descriptions
VALUE signal
ABS_CALL detection
DETECTION P-VALUE detection p-value

Data table
AFFX-BioB-5_at 454.3 P 0.015183
AFFX-BioB-M_at 787.7 P 0.002556
AFFX-BioB-3_at 339.3 P 0.018281
AFFX-BioC-5_at 1323.5 P 0.000147
AFFX-BioC-3_at 738.3 P 0.000195
AFFX-BioDn-5_at 799.5 P 0.000754
AFFX-BioDn-3_at 6527.8 P 0.000509
AFFX-CreX-5_at 12152.4 P 0.00006
AFFX-CreX-3_at 17556.8 P 0.000044
AFFX-DapX-5_at 57.7 A 0.262827
AFFX-DapX-M_at 64.3 A 0.287726
AFFX-DapX-3_at 10.3 A 0.966323
AFFX-LysX-5_at 70.7 A 0.205732
AFFX-LysX-M_at 44.9 A 0.699394
AFFX-LysX-3_at 81.3 A 0.227636
AFFX-PheX-5_at 15.4 A 0.749204
AFFX-PheX-M_at 6.7 A 0.966323
AFFX-PheX-3_at 236.4 A 0.239063
AFFX-ThrX-5_at 27 A 0.724854
AFFX-ThrX-M_at 104.9 A 0.250796

Total number of rows: 22690

Table truncated, full table size 625 Kbytes.

Supplementary file Size Download File type/resource
GSM224666_Control1w_MOE430A_15_07_04.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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