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GEO accession:
Sample GSM22467
Query DataSets for GSM22467
Status
Public on Jun 07, 2004
Title
whole tissue section from case 547
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 547 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=547;Tumor.type=D/L;Size=1.5;Grade=2;Nodes=ND;ER=Pos;PR=Pos;HER2=Neg;Age=74;DFS=129;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.1990793
3874.5
10047.5
1.1479656709123656
6459
-0.1666193
878.0
1269.0
0.8909280852937276
16790
1.9716933
258.0
1456.0
3.922281279102709
4210
-0.0715393
116.0
120.0
0.9516225240265935
13392
0.0112213
3844.5
8656.0
1.0078081152869904
1575
0.3302103
112.0
156.0
1.2571959909146448
9300
0.4767663
175.0
295.5
1.3916201808923616
5306
-0.2257983
137.0
130.0
0.8551218178271278
4514
-0.2446353
125.0
115.0
0.8440295918755539
8664
0.6750153
125.0
230.5
1.59661357967358
1645
0.8644923
208.0
486.0
1.8206980272679656
13828
1.6048303
105.0
379.0
3.0415997475651557
3944
1.9137383
113.0
522.5
3.767839585820336
500
-0.4014853
2201.0
3254.0
0.7570787362841878
21226
0.0598953
165.0
201.0
1.0423902134319167
15545
-1.7625863
1750.5
865.0
0.2947194376290636
6346
0.5883303
376.5
796.5
1.5035056736505221
4381
0.1059783
94.0
107.0
1.076223499378392
3385
0.8474053
4470.0
18654.0
1.7992617411346514
19553
1.6503663
111.0
419.0
3.1391327579348283
Total number of rows:
22575
Table truncated, full table size
1063 Kbytes
.
Supplementary data files not provided
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