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Sample GSM22468 Query DataSets for GSM22468
Status Public on Jun 07, 2004
Title whole tissue section from case 605
Sample type RNA
 
Channel 1
Source name RNA from whole tissue section of case 605 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description whole tissue section of breast cancer.
Clinical information: Sample.ID=605;Tumor.type=D;Size=2.2;Grade=2;Nodes=6/18;ER=Pos;PR=Pos;HER2=Neg;Age=70;DFS=110;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date May 27, 2005
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1379 breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -1.3129503 3513.0 1798.0 0.4024969820973679
6459 -0.1353233 783.0 737.5 0.910466199690195
16790 0.6722633 263.0 394.0 1.593570915615201
4210 0.1646743 149.0 142.0 1.120912641647775
13392 -0.2674453 3468.0 3970.0 0.8307896099053445
1575 0.2021503 164.0 163.0 1.1504112268800726
9300 0.2608033 197.5 210.5 1.198145382617344
5306 0.0260503 158.0 137.0 1.0182201499807744
4514 -0.1079883 163.0 128.5 0.9278812869653231
8664 0.4511203 144.0 169.0 1.3671014706475004
1645 1.0577363 279.0 558.5 2.0816626373054787
13828 0.8569703 164.0 265.0 1.8112307443815863
3944 -0.1720663 145.0 107.0 0.8875708287879324
500 0.3081183 1855.0 2876.0 1.238091143580132
21226 0.4168993 274.0 342.0 1.335054649586005
15545 -2.4975423 1598.0 289.0 0.17707818164246597
6346 -0.1767453 410.0 347.0 0.88469671769396
4381 0.2150003 117.5 112.0 1.1607036151309373
3385 0.0396513 3711.0 5462.5 1.0278652099631294
19553 1.3129293 167.5 380.5 2.4844539041805445

Total number of rows: 22575

Table truncated, full table size 1060 Kbytes.




Supplementary data files not provided

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