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GEO accession:
Sample GSM22471
Query DataSets for GSM22471
Status
Public on Jun 07, 2004
Title
whole tissue section from case 638
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 638 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=638;Tumor.type=D;Size=2;Grade=2;Nodes=1/24;ER=Pos;PR=Pos;HER2=Neg;Age=67;DFS=148;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.1760983
3124.0
2477.0
0.44254689218659893
6459
0.0311843
774.0
1003.0
1.0218504188758781
16790
0.6539263
206.0
328.0
1.5734440606240951
4210
0.2239753
164.0
185.0
1.167947257997929
13392
0.1268313
3469.0
8243.0
1.091892806997318
1575
0.1189193
111.0
112.0
1.0859212062561074
9300
0.4895183
280.0
412.5
1.4039756653805395
5306
0.2059753
157.0
174.0
1.1534658152677553
4514
0.0025093
115.0
107.0
1.0017405092653728
8664
0.2666853
161.0
187.0
1.203040342919367
1645
0.3411763
228.0
292.0
1.2667891398177091
13828
1.0615923
151.5
313.0
2.087233698772596
3944
0.0040803
152.0
145.0
1.0028320331804796
500
-0.1219893
2067.0
3353.0
0.9189197274132858
21226
-0.3825363
169.0
123.0
0.7670881292046093
15545
-2.9787453
1380.0
197.5
0.12685522305427627
6346
-0.3527573
403.0
335.0
0.7830862442095102
4381
0.5823933
281.0
444.0
1.497330757599069
3385
1.3826613
3927.0
24543.0
2.6074883027977345
19553
4.1613573
129.0
2666.0
17.893416301950445
Total number of rows:
22575
Table truncated, full table size
1062 Kbytes
.
Supplementary data files not provided
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