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GEO accession:
Sample GSM22472
Query DataSets for GSM22472
Status
Public on Jun 07, 2004
Title
whole tissue section from case 648
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 648 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=648;Tumor.type=D;Size=1.1;Grade=2;Nodes=0/15;ER=Pos;PR=Pos;HER2=Neg;Age=62;DFS=160;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.7201973
4876.0
2153.0
0.3035073317323303
6459
-0.6092103
800.0
517.0
0.655555447560989
16790
0.3840903
274.0
308.0
1.3050364400014152
4210
-0.0772503
170.0
124.0
0.9478623753253603
13392
0.8696513
3721.0
11862.0
1.8272202803080653
1575
0.2333643
178.5
166.0
1.17557278605599
9300
0.4781323
227.5
265.5
1.3929388770618003
5306
-0.0632123
222.0
171.5
0.9571309816733937
4514
-0.2693813
219.0
144.5
0.8296754310409481
8664
0.4589763
181.0
200.0
1.3745661079843474
1645
1.1792633
346.0
740.0
2.2646101170334574
13828
1.3715753
189.0
419.0
2.587528096572673
3944
0.0865253
184.0
154.0
1.0618098206823954
500
-0.2526453
2265.0
2559.5
0.8393561573067296
21226
0.1151893
217.0
191.0
1.0831168609220716
15545
-0.9556293
2097.0
1319.0
0.5156166554141537
6346
0.0592283
376.5
350.5
1.0419080417840132
4381
0.2126143
146.0
129.0
1.1587858506301352
3385
1.1884033
5236.5
22453.5
2.27900260802712
19553
-0.0957853
229.5
174.0
0.9357630261037914
Total number of rows:
22575
Table truncated, full table size
1062 Kbytes
.
Supplementary data files not provided
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