GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM22473
Query DataSets for GSM22473
Status
Public on Jun 07, 2004
Title
whole tissue section from case 651
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 651 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=651;Tumor.type=D;Size=4.7;Grade=3;Nodes=10/13;ER=Pos;PR=Pos;HER2=Neg;Age=48;DFS=137;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.5046833
2662.0
2293.0
0.7048153755313527
6459
-0.5557603
692.0
466.0
0.6802987338988811
16790
-0.2899743
187.0
152.5
0.8179170495639126
4210
0.0002833
138.0
138.0
1.0001962356533467
13392
0.1962823
2755.0
4144.0
1.1457419924435237
1575
0.1961843
101.0
116.0
1.1456642947085995
9300
0.7915753
182.0
313.0
1.7309626426983116
5306
0.3039753
133.0
164.0
1.2345415029207045
4514
-0.0985963
124.0
116.0
0.9339415317281021
8664
0.1207593
125.0
136.0
1.087306509392184
1645
0.3346063
168.0
211.0
1.2610326662304665
13828
0.4226533
130.0
174.0
1.340390311641573
3944
0.1375203
142.0
156.0
1.100012267425287
500
0.2648883
1547.0
2139.5
1.201542805840113
21226
-0.2226493
172.5
147.5
0.8569902266657794
15545
-1.5207373
1332.0
467.0
0.3485079035857412
6346
0.1160693
327.0
351.0
1.0837775172086592
4381
0.2953153
100.0
123.0
1.2271531095135615
3385
1.1072393
3422.0
10918.0
2.1543302051266275
19553
0.7190303
344.5
562.0
1.6460744615287135
Total number of rows:
22575
Table truncated, full table size
1058 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
