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Sample GSM224733 Query DataSets for GSM224733
Status Public on Aug 24, 2007
Title Spleen CD11b(+)11c(-)_BP03
Sample type RNA
 
Source name Spleen (freshly isolated)
Organism Mus musculus
Characteristics C57BL/6
Treatment protocol No treatment involved
Growth protocol Freshly isolated, then FACS-sorted for CD11b+11c- cells
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy Mini Kit extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol As per Vanderbilt Microarray Shared Resource Standard Protocol
 
Hybridization protocol As per Vanderbilt Microarray Shared Resource Standard Protocol
Scan protocol As per Vanderbilt Microarray Shared Resource Standard Protocol
Description Gene expression data from macrophages
Data processing As per Vanderbilt Microarray Shared Resource Standard Protocol, Algorithm: 5.0 ExpressionStat; MAS5.0
 
Submission date Aug 24, 2007
Last update date Aug 02, 2019
Contact name Tim Denning
Organization name La Jolla Institute for Allergy and Immunology
Street address 9420 Athena Circle
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL1261
Series (1)
GSE8868 Comparison of splenic and small intestine lamina propria macrophages
Relations
Reanalyzed by GSE45704
Reanalyzed by GSE119085
Reanalyzed by GSE135324

Data table header descriptions
ID_REF
VALUE MAS5.0-calculated probe set signal intensities
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1637.73 P 4.42873e-05
AFFX-BioB-M_at 2893.26 P 4.42873e-05
AFFX-BioB-3_at 2036.57 P 4.42873e-05
AFFX-BioC-5_at 3750.03 P 4.42873e-05
AFFX-BioC-3_at 2115.67 P 4.42873e-05
AFFX-BioDn-5_at 4850.21 P 4.42873e-05
AFFX-BioDn-3_at 11101.1 P 4.42873e-05
AFFX-CreX-5_at 20071.8 P 5.16732e-05
AFFX-CreX-3_at 19948.5 P 4.42873e-05
AFFX-DapX-5_at 5.69834 A 0.287743
AFFX-DapX-M_at 13.4779 A 0.48511
AFFX-DapX-3_at 1.64696 A 0.772383
AFFX-LysX-5_at 9.85099 A 0.195266
AFFX-LysX-M_at 3.21453 A 0.659339
AFFX-LysX-3_at 2.12033 A 0.783476
AFFX-PheX-5_at 1.7434 A 0.9273
AFFX-PheX-M_at 1.07871 A 0.876428
AFFX-PheX-3_at 9.06019 A 0.368438
AFFX-ThrX-5_at 1.51933 A 0.927318
AFFX-ThrX-M_at 6.98925 A 0.645572

Total number of rows: 45101

Table truncated, full table size 1389 Kbytes.




Supplementary file Size Download File type/resource
GSM224733.CEL.gz 3.8 Mb (ftp)(http) CEL
GSM224733.CHP.gz 245.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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