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Sample GSM224735 Query DataSets for GSM224735
Status Public on Aug 24, 2007
Title Spleen CD11b(+)11c(-)_BP20
Sample type RNA
 
Source name Spleen (freshly isolated)
Organism Mus musculus
Characteristics C57BL/6
Treatment protocol No treatment involved
Growth protocol Freshly isolated, then FACS-sorted for CD11b+11c- cells
Extracted molecule total RNA
Extraction protocol Qiagen Rneasy Mini Kit extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol As per Vanderbilt Microarray Shared Resource Standard Protocol
 
Hybridization protocol As per Vanderbilt Microarray Shared Resource Standard Protocol
Scan protocol As per Vanderbilt Microarray Shared Resource Standard Protocol
Description Gene expression data from macrophages
Data processing As per Vanderbilt Microarray Shared Resource Standard Protocol, Algorithm: 5.0 ExpressionStat; MAS5.0
 
Submission date Aug 24, 2007
Last update date Aug 02, 2019
Contact name Tim Denning
Organization name La Jolla Institute for Allergy and Immunology
Street address 9420 Athena Circle
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platform ID GPL1261
Series (1)
GSE8868 Comparison of splenic and small intestine lamina propria macrophages
Relations
Reanalyzed by GSE45704
Reanalyzed by GSE119085
Reanalyzed by GSE135324

Data table header descriptions
ID_REF
VALUE MAS5.0-calculated probe set signal intensities
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2442.82 P 4.42873e-05
AFFX-BioB-M_at 4801.75 P 4.42873e-05
AFFX-BioB-3_at 3626.83 P 4.42873e-05
AFFX-BioC-5_at 5722.13 P 4.42873e-05
AFFX-BioC-3_at 3324.7 P 4.42873e-05
AFFX-BioDn-5_at 7964.74 P 4.42873e-05
AFFX-BioDn-3_at 18019.6 P 4.42873e-05
AFFX-CreX-5_at 33256.1 P 4.42873e-05
AFFX-CreX-3_at 33146.6 P 4.42873e-05
AFFX-DapX-5_at 5.47422 A 0.617401
AFFX-DapX-M_at 2.15479 A 0.686277
AFFX-DapX-3_at 14.4644 A 0.411373
AFFX-LysX-5_at 5.1275 A 0.52976
AFFX-LysX-M_at 24.5681 A 0.250796
AFFX-LysX-3_at 0.450536 A 0.986189
AFFX-PheX-5_at 1.4612 A 0.804734
AFFX-PheX-M_at 1.25945 A 0.86866
AFFX-PheX-3_at 16.5518 M 0.050229
AFFX-ThrX-5_at 1.98583 A 0.949771
AFFX-ThrX-M_at 0.470068 A 0.860518

Total number of rows: 45101

Table truncated, full table size 1392 Kbytes.




Supplementary file Size Download File type/resource
GSM224735.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM224735.CHP.gz 250.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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