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GEO accession:
Sample GSM22475
Query DataSets for GSM22475
Status
Public on Jun 07, 2004
Title
whole tissue section from case 662
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 662 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=662;Tumor.type=D;Size=1;Grade=3;Nodes=6/11;ER=Pos;PR=Pos;HER2=Neg;Age=79;DFS=27;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.3796273
5069.0
6226.0
0.7686363613621108
6459
-0.3729853
898.0
652.0
0.7721831646781081
16790
0.3393963
200.0
239.0
1.2652267222651368
4210
0.1222163
113.0
124.0
1.0884050434243864
13392
0.3748943
3798.0
7798.5
1.2967439592212107
1575
0.0915913
94.0
103.5
1.0655442572435978
9300
0.8268693
228.0
374.5
1.7738316500153257
5306
-0.0602563
127.0
122.0
0.9590941144136871
4514
0.3056163
105.0
131.0
1.2359464363084485
8664
1.0710773
110.0
225.0
2.101000736037026
1645
0.7285833
221.0
340.5
1.6570113263064727
13828
2.1675693
102.5
436.0
4.492657202199857
3944
0.2537723
122.0
144.5
1.1923207351548284
500
-0.2446323
2562.5
2741.0
0.8440311806608713
21226
0.1504083
157.0
169.0
1.1098834138979887
15545
-3.8433903
1823.0
116.0
0.06966654607324772
6346
-0.1484403
390.0
322.5
0.9022253632941586
4381
0.1946453
154.5
171.5
1.1444424565999234
3385
0.8032783
5385.0
16631.0
1.745061841721158
19553
1.6005053
97.5
286.0
3.0324950071388637
Total number of rows:
22575
Table truncated, full table size
1061 Kbytes
.
Supplementary data files not provided
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