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GEO accession:
Sample GSM22480
Query DataSets for GSM22480
Status
Public on Jun 07, 2004
Title
whole tissue section from case 823
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 823 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=823;Tumor.type=D;Size=2;Grade=2;Nodes=0/6;ER=Pos;PR=Pos;HER2=Neg;Age=51;DFS=69;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.3557123
4996.0
6001.5
0.7814838115586912
6459
0.3763633
871.0
1239.0
1.2980652240447392
16790
0.2891433
248.0
279.0
1.2219140477194466
4210
0.0442673
135.0
121.0
1.031158981617951
13392
0.5799283
4146.0
9767.0
1.4947745471431593
1575
0.0698773
151.0
139.0
1.0496271716538612
9300
0.2582863
212.5
230.5
1.1960566135214925
5306
-0.1717263
159.0
123.5
0.8877797977338687
4514
0.0243753
122.0
107.0
1.0170387019688225
8664
1.1210333
149.5
293.5
2.1750268296331345
1645
1.1719033
255.0
545.5
2.253087233976388
13828
1.5650383
126.0
336.0
2.95885329274091
3944
-0.2181883
136.0
101.0
0.859644696345611
500
-0.1661743
2344.0
2752.0
0.8912030292244897
21226
0.1145813
180.5
174.0
1.082660444930602
15545
-2.9415213
1969.0
264.5
0.13017087621332918
6346
0.4561103
437.0
589.0
1.3718374467418795
4381
0.0397403
107.0
94.0
1.027928651387268
3385
0.1764133
5630.0
10255.0
1.130070684126916
19553
0.1605823
122.0
118.0
1.1177378608856348
Total number of rows:
22575
Table truncated, full table size
1063 Kbytes
.
Supplementary data files not provided
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