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GEO accession:
Sample GSM22482
Query DataSets for GSM22482
Status
Public on Jun 07, 2004
Title
whole tissue section from case 843
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 843 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=843;Tumor.type=D;Size=3.4;Grade=2;Nodes=11/20;ER=Pos;PR=Neg;HER2=Neg;Age=76;DFS=122;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.3476733
4184.0
10932.5
1.272506483727783
6459
0.1400043
715.0
1004.0
1.1019078813621157
16790
1.2895753
216.0
611.0
2.444561135227974
4210
-0.2277263
158.0
149.0
0.8539797333503103
13392
0.0100383
3833.5
7715.5
1.0069823682309527
1575
0.1573143
150.5
186.0
1.1152091865662759
9300
0.4699273
215.0
338.0
1.385039730841899
5306
0.3124543
180.5
251.0
1.2418182817828416
4514
-0.0675683
213.0
228.0
0.954244921292982
8664
0.8194083
153.0
302.5
1.7646822247242602
1645
0.2318013
221.0
293.5
1.1743000043837748
13828
3.4710833
207.0
2884.0
11.089196831165154
3944
1.1579353
156.0
393.0
2.2313787621837857
500
-0.5958473
2037.0
2180.0
0.6616557736274178
21226
-0.3270253
194.0
172.0
0.7971784437265916
15545
-1.8264933
1696.0
632.0
0.28194911433829517
6346
-0.0721493
391.0
434.5
0.9512198776138086
4381
0.5177783
136.0
216.0
1.431748097482647
3385
3.0398573
3795.5
65231.0
8.224095784885865
19553
0.3492673
194.0
278.0
1.273912779880142
Total number of rows:
22575
Table truncated, full table size
1063 Kbytes
.
Supplementary data files not provided
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