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GEO accession:
Sample GSM22483
Query DataSets for GSM22483
Status
Public on Jun 07, 2004
Title
whole tissue section from case 849
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 849 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=849;Tumor.type=D;Size=2;Grade=1;Nodes=0/26;ER=Pos;PR=Pos;HER2=Neg;Age=75;DFS=23;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.1322713
3625.0
2714.0
0.4561971550162158
6459
-0.3570633
859.0
844.0
0.7807525137335007
16790
-0.9008493
184.0
108.0
0.5355716073309985
4210
0.4117223
124.0
181.0
1.3302730957388462
13392
0.5022313
3317.0
8611.5
1.4164022165982202
1575
0.0733483
94.0
108.0
1.0521552370892082
9300
0.5137903
198.0
316.0
1.4277959617573166
5306
-0.1045093
118.0
120.0
0.930121252450036
4514
0.0379263
91.0
102.0
1.0266367616253542
8664
0.8353863
103.5
202.5
1.7843342850605564
1645
1.4253683
195.0
594.0
2.685829166739881
13828
2.6472273
100.0
702.0
6.264618697857532
3944
0.2922173
120.0
161.0
1.2245203537184657
500
-0.0489823
2220.0
3432.0
0.9666184223574
21226
0.2774863
148.0
197.5
1.2120812292034602
15545
-1.6173853
1566.5
662.0
0.32592574695911974
6346
-0.1955733
357.5
355.0
0.8732259898601149
4381
0.0727163
81.0
93.0
1.0516945225697654
3385
1.4692163
4035.0
21921.0
2.7687141472019827
19553
0.8868503
139.5
285.5
1.8491342991202235
Total number of rows:
22575
Table truncated, full table size
1059 Kbytes
.
Supplementary data files not provided
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