GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM22485
Query DataSets for GSM22485
Status
Public on Jun 07, 2004
Title
whole tissue section from case 868
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 868 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=868;Tumor.type=D;Size=3;Grade=3;Nodes=0/13;ER=Pos;PR=Pos;HER2=Neg;Age=65;DFS=130;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.7605763
2637.0
2411.0
0.590260756004305
6459
-0.5529893
652.0
591.0
0.6816063308302558
16790
0.0380643
280.0
334.0
1.026735179005125
4210
0.3667693
158.0
204.0
1.289461866641475
13392
-0.5026963
2568.0
2827.5
0.7057864092109114
1575
0.3622563
302.0
472.0
1.2854344945811513
9300
0.2633493
205.0
266.5
1.200262043011379
5306
-0.0348943
140.0
123.0
0.9761031673243634
4514
-0.0347193
173.0
166.0
0.9762217318584494
8664
0.8527783
198.0
408.0
1.80597475505806
1645
0.4293383
290.0
473.0
1.346615787349951
13828
0.5089603
232.5
382.0
1.423024299925782
3944
0.2020743
170.0
197.0
1.1503509772838652
500
-0.1383823
1388.0
1875.0
0.9085374266461678
21226
0.2264783
397.5
593.0
1.1699752458545642
15545
-1.8347463
1454.0
573.0
0.28034083699265994
6346
0.2276433
350.5
510.0
1.1709207011971146
4381
0.0588943
145.0
140.0
1.0416668776140678
3385
1.1789553
3231.0
12292.0
2.264126759111333
19553
1.8917873
252.0
1221.0
3.7109448613316345
Total number of rows:
22575
Table truncated, full table size
1059 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
