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GEO accession:
Sample GSM22490
Query DataSets for GSM22490
Status
Public on Jun 07, 2004
Title
whole tissue section from case 1047
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 1047 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=1047;Tumor.type=D/L;Size=2.6;Grade=2;Nodes=0/18;ER=Pos;PR=Neg;HER2=Neg;Age=70;DFS=128;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.7326173
3964.0
3794.0
0.6018114406707131
6459
1.4802913
731.0
2369.0
2.7900505237134907
16790
0.2768793
279.0
331.0
1.211570726977657
4210
0.0923303
159.0
153.0
1.0660904446676958
13392
0.7711383
3530.0
11020.0
1.7066159709365807
1575
0.2642643
208.5
236.5
1.2010233319653814
9300
0.3416513
206.0
247.0
1.2672056902194566
5306
-0.0063833
182.0
166.0
0.9955856254394913
4514
0.0553643
173.0
164.0
1.0391210288479318
8664
0.4092913
170.0
209.0
1.3280329644680755
1645
0.7353473
301.5
502.5
1.664798134226015
13828
0.1333153
680.0
789.0
1.0968107035856118
3944
0.2100153
154.0
161.0
1.156699904170735
500
-0.1983673
1843.0
2053.0
0.8715365444329553
21226
0.5796893
280.5
415.0
1.4945269458197263
15545
-1.2604153
1891.0
917.0
0.4174239372850115
6346
0.4469043
377.0
520.5
1.3631119231570554
4381
0.3966153
150.0
179.5
1.3164155272234224
3385
-0.0438733
4122.0
7082.0
0.9700473879460879
19553
0.5144863
205.0
279.0
1.428484958907229
Total number of rows:
22575
Table truncated, full table size
1061 Kbytes
.
Supplementary data files not provided
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