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GEO accession:
Sample GSM22493
Query DataSets for GSM22493
Status
Public on Jun 07, 2004
Title
whole tissue section from case 1125
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 1125 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=1125;Tumor.type=D;Size=2.6;Grade=2;Nodes=0/18;ER=Pos;PR=Neg;HER2=Neg;Age=54;DFS=123;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.4597023
3874.0
5101.0
0.7271364916924672
6459
-0.8363403
812.0
568.0
0.5600627767608144
16790
0.1228043
264.5
288.5
1.0888492115969253
4210
0.1619793
160.0
148.0
1.1188205216288516
13392
0.2720883
3174.0
7023.0
1.2075545574630544
1575
0.4408313
199.0
254.0
1.357385849851343
9300
0.2614523
205.5
229.0
1.1986841881682704
5306
-0.1324473
183.0
140.0
0.9122824806583618
4514
-0.0162413
181.0
152.0
0.9888059682766608
8664
0.9214653
171.5
307.5
1.894037154280189
1645
0.6741303
325.0
586.5
1.5956339417467817
13828
1.1576063
210.5
491.5
2.230869638213928
3944
0.2471003
169.0
172.0
1.186818759760744
500
-0.4485013
1975.0
2259.5
0.7328037011205233
21226
0.3246343
313.0
424.0
1.2523468776426858
15545
-0.7961713
1860.5
1610.0
0.5758755826333919
6346
0.1916153
381.0
491.0
1.1420416283707207
4381
0.4428143
137.0
150.0
1.3592528174104996
3385
0.9852233
4061.0
15769.0
1.979619398358764
19553
0.5837723
221.5
330.5
1.4987626926536697
Total number of rows:
22575
Table truncated, full table size
1062 Kbytes
.
Supplementary data files not provided
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