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GEO accession:
Sample GSM22494
Query DataSets for GSM22494
Status
Public on Jun 07, 2004
Title
whole tissue section from case 1205
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 1205 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=1205;Tumor.type=D;Size=2.7;Grade=2;Nodes=1/19;ER=Pos;PR=Pos;HER2=Neg ;Age=71;DFS=88;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.9397583
3677.0
3325.0
0.5213202174635089
6459
-0.6906763
922.0
817.0
0.6195636027253597
16790
0.1004243
286.0
363.5
1.0720885099434037
4210
0.3790583
133.0
167.0
1.300492799035858
13392
-0.1885323
3341.0
5220.0
0.8774980271458721
1575
0.2903473
144.0
173.0
1.2229345172240764
9300
0.4220693
171.0
242.0
1.3398473259048629
5306
-0.0727293
118.5
98.0
0.9508374108087206
4514
-0.1299813
157.0
138.0
0.9138437774867949
8664
0.8450293
150.0
286.0
1.7963002453322305
1645
1.3870573
275.5
934.5
2.6154466914015733
13828
1.4443963
169.0
537.0
2.7214885289066832
3944
0.1045633
133.5
134.0
1.0751686971585377
500
-0.5903753
1889.0
2022.0
0.6641702051659485
21226
0.1258163
333.0
447.0
1.0911246987598004
15545
-2.8490533
1868.5
368.0
0.13878724203385964
6346
0.3471303
354.5
571.5
1.2720276587144563
4381
0.0084263
117.0
103.0
1.005857407087894
3385
1.2836313
3927.5
18012.0
2.434508684451947
19553
1.2075933
207.0
575.0
2.3095206824383965
Total number of rows:
22575
Table truncated, full table size
1062 Kbytes
.
Supplementary data files not provided
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