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GEO accession:
Sample GSM22501
Query DataSets for GSM22501
Status
Public on Jun 07, 2004
Title
whole tissue section from case 1363
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 1363 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=1363;Tumor.type=D;Size=2.1;Grade=2;Nodes=0/15;ER=Pos;PR=Pos;HER2=Neg ;Age=56;DFS=114;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.1999533
2417.5
5332.5
1.14866103367378
6459
0.0537693
773.0
1151.5
1.0379731305854967
16790
1.2447073
227.0
664.0
2.3697047896021184
4210
-0.0531653
188.0
198.5
0.9638192866223066
13392
0.4493973
3116.0
8770.0
1.3654693321912272
1575
0.2076513
116.5
135.5
1.1548067334314907
9300
0.3636263
250.5
384.0
1.2866555304588012
5306
0.9304123
315.0
771.0
1.9058202142644378
4514
-0.0385623
151.0
154.0
0.9736251476069088
8664
0.1599593
157.0
188.0
1.1172556690835187
1645
0.3337423
244.0
364.0
1.260278033092367
13828
2.5483473
176.0
1317.0
5.849635060992998
3944
0.2715763
197.0
269.0
1.207125810597982
500
-0.3545023
1726.0
2299.0
0.7821396529763398
21226
0.0057063
183.0
201.0
1.0039630456847475
15545
-1.1493373
1252.0
822.0
0.45083228891696137
6346
-0.4689533
398.5
353.5
0.7224885389684108
4381
0.3997103
124.5
170.5
1.3192424409359629
3385
2.1491833
3217.0
32010.0
4.435765802264589
19553
1.9009703
184.5
853.5
3.7346433441426328
Total number of rows:
22575
Table truncated, full table size
1061 Kbytes
.
Supplementary data files not provided
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