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Sample GSM22502 Query DataSets for GSM22502
Status Public on Jun 07, 2004
Title whole tissue section from case 1368
Sample type RNA
 
Channel 1
Source name RNA from whole tissue section of case 1368 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description whole tissue section of breast cancer.
Clinical information: Sample.ID=1368;Tumor.type=D;Size=2.6;Grade=2;Nodes=ND;ER=Pos;PR=Pos;HER2=Neg ;Age=82;DFS=63;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date May 27, 2005
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1379 breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -1.3443073 3928.0 2127.5 0.39384308712370664
6459 1.0653763 957.5 2275.5 2.0927154586073766
16790 1.4344723 273.0 713.0 2.702831965025506
4210 0.1469963 158.0 159.0 1.1072616649903742
13392 0.4802203 3856.5 9384.0 1.3949567858451386
1575 0.3908983 163.0 195.5 1.3112095269641015
9300 0.7274303 230.0 358.5 1.6556865770153364
5306 -0.0342663 161.5 143.0 0.9765284589273027
4514 0.0380423 166.0 155.0 1.0267197783571058
8664 0.0460433 154.0 144.0 1.0324295274722237
1645 0.8931463 287.0 510.0 1.8572216106004147
13828 1.1199353 160.0 322.5 2.1733712420210956
3944 -0.0068213 147.0 132.0 0.9952832501290736
500 0.1344223 2314.0 3475.0 1.0976530684895782
21226 0.3284053 279.5 331.5 1.255624822930265
15545 -2.5582273 1797.0 307.0 0.1697840647314267
6346 0.2996343 453.5 545.0 1.230831709232447
4381 0.4637163 117.0 145.0 1.3790893223078822
3385 0.1242223 4397.0 8379.0 1.0899201894423465
19553 0.7280413 176.5 270.5 1.656387996301903

Total number of rows: 22575

Table truncated, full table size 1063 Kbytes.




Supplementary data files not provided

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