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GEO accession:
Sample GSM22502
Query DataSets for GSM22502
Status
Public on Jun 07, 2004
Title
whole tissue section from case 1368
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 1368 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=1368;Tumor.type=D;Size=2.6;Grade=2;Nodes=ND;ER=Pos;PR=Pos;HER2=Neg ;Age=82;DFS=63;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.3443073
3928.0
2127.5
0.39384308712370664
6459
1.0653763
957.5
2275.5
2.0927154586073766
16790
1.4344723
273.0
713.0
2.702831965025506
4210
0.1469963
158.0
159.0
1.1072616649903742
13392
0.4802203
3856.5
9384.0
1.3949567858451386
1575
0.3908983
163.0
195.5
1.3112095269641015
9300
0.7274303
230.0
358.5
1.6556865770153364
5306
-0.0342663
161.5
143.0
0.9765284589273027
4514
0.0380423
166.0
155.0
1.0267197783571058
8664
0.0460433
154.0
144.0
1.0324295274722237
1645
0.8931463
287.0
510.0
1.8572216106004147
13828
1.1199353
160.0
322.5
2.1733712420210956
3944
-0.0068213
147.0
132.0
0.9952832501290736
500
0.1344223
2314.0
3475.0
1.0976530684895782
21226
0.3284053
279.5
331.5
1.255624822930265
15545
-2.5582273
1797.0
307.0
0.1697840647314267
6346
0.2996343
453.5
545.0
1.230831709232447
4381
0.4637163
117.0
145.0
1.3790893223078822
3385
0.1242223
4397.0
8379.0
1.0899201894423465
19553
0.7280413
176.5
270.5
1.656387996301903
Total number of rows:
22575
Table truncated, full table size
1063 Kbytes
.
Supplementary data files not provided
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