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GEO accession:
Sample GSM22505
Query DataSets for GSM22505
Status
Public on Jun 07, 2004
Title
whole tissue section from case 1405
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 1405 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=1405;Tumor.type=D;Size=1;Grade=3;Nodes=ND;ER=Pos (<10%);PR=Pos;HER2=Neg;Age=81;DFS=95;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.3665283
3025.0
6060.0
0.7756471505620429
6459
-1.5801503
655.0
360.0
0.3344472266233088
16790
-0.5490383
167.0
149.0
0.6834758756091416
4210
0.5787443
142.5
294.0
1.4935483430675327
13392
-0.0570163
2906.0
7327.0
0.9612504414374856
1575
0.0873103
92.0
116.0
1.0623876404193902
9300
0.1730723
132.0
195.0
1.1274568085380738
5306
0.1324913
119.0
166.0
1.096184456407775
4514
0.0338233
109.5
138.5
1.0237215997817684
8664
0.9182663
106.0
265.0
1.8898431409107654
1645
-0.2059273
142.0
159.0
0.8669812941565717
13828
0.6505653
113.0
233.0
1.5697827750090163
3944
-0.1117383
123.0
143.0
0.9254726284609769
500
-0.7310873
1690.0
2240.5
0.6024500305385765
21226
0.3095113
148.0
250.0
1.2392879082655197
15545
-2.7766833
1384.5
359.0
0.14592682830060877
6346
0.1545793
306.5
541.0
1.1130968371599135
4381
0.5209503
144.5
286.0
1.43489930896341
3385
-0.1525393
3368.0
8133.0
0.8996659173473084
19553
0.2770813
104.0
157.0
1.211740766924211
Total number of rows:
22575
Table truncated, full table size
1060 Kbytes
.
Supplementary data files not provided
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