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GEO accession:
Sample GSM22506
Query DataSets for GSM22506
Status
Public on Jun 07, 2004
Title
whole tissue section from case 1419
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 1419 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=1419;Tumor.type=D;Size=2.5;Grade=2;Nodes=1/8;ER=Pos;PR=Pos;HER2=Neg;Age=59;DFS=86;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.4680563
4569.5
6057.5
0.7229380477777134
6459
-0.5515513
1012.0
896.0
0.6822862452956328
16790
0.3276743
412.5
559.5
1.254988420765261
4210
0.0255823
181.0
141.0
1.0178902688172116
13392
0.5243133
3524.0
9422.0
1.438248933021077
1575
-0.0175803
193.0
149.0
0.9878884023670407
9300
0.3622753
246.0
287.0
1.2854509501870233
5306
-0.1480173
196.5
137.0
0.9024902851860492
4514
-0.3058603
185.0
110.0
0.8089600105953717
8664
1.1059473
184.0
355.0
2.15240043753168
1645
0.5325163
308.0
448.0
1.4464494507227417
13828
1.6823573
178.0
545.0
3.2095186917982974
3944
0.1126463
185.0
156.5
1.0812091066874
500
-0.3450663
2469.5
3188.5
0.7872720209197509
21226
0.6800203
233.0
346.0
1.6021624705113027
15545
-2.0136313
1910.0
637.0
0.2476490577631048
6346
0.4476773
414.0
619.0
1.3638429252386857
4381
0.1204833
145.0
111.0
1.0870987139759478
3385
1.2892293
5101.0
24438.5
2.443974899408005
19553
0.2549743
172.0
159.0
1.1933143126832124
Total number of rows:
22575
Table truncated, full table size
1064 Kbytes
.
Supplementary data files not provided
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