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GEO accession:
Sample GSM225363
Query DataSets for GSM225363
Status
Public on Aug 22, 2008
Title
Smad5MOB
Sample type
RNA
Channel 1
Source name
Smad5 morphant
Organism
Danio rerio
Characteristics
Smad5 morphant, 1-somite embryo
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
Cy3
Label protocol
Nimblegen
Channel 2
Source name
Wildtype
Organism
Danio rerio
Characteristics
Wildtype, 1-somite embryo
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
Cy5
Label protocol
Nimblegen
Hybridization protocol
Nimblegen
Scan protocol
Nimblegen
Description
set B
Data processing
Data normalized using NimbleScan. Log2 ratios (experimental/wildtype) determined using R analysis software.
Submission date
Aug 28, 2007
Last update date
Aug 22, 2008
Contact name
Lisa J. McReynolds
E-mail(s)
lmcreyno@aecom.yu.edu
Organization name
Albert Einstein College of Medicine
Department
Developmental and Molecular Biology
Lab
Todd Evans
Street address
1300 Morris Park Ave. Chanin 501
City
Bronx
State/province
NY
ZIP/Postal code
10461
Country
USA
Platform ID
GPL5783
Series (1)
GSE8903
Comparsion of Smad1 and Smad5 Dependent Transcript Profiles in Zebrafish
Data table header descriptions
ID_REF
VALUE
log2 ratio
CH1_SIGNAL
experimental sample raw data
CH2_SIGNAL
wildtype sample raw data
Data table
ID_REF
VALUE
CH1_SIGNAL
CH2_SIGNAL
3626_0331_0947
-0.153730892018743
15313.67
17858.45
3626_0419_0911
-0.301294252580576
14899.22
20137.89
3626_0354_0810
-0.0898624943060032
12038.33
13170.22
3626_0264_0944
-0.188272618422947
10728
12950.44
3626_0245_0607
-0.231154818839415
9155.78
11536.78
3626_0479_0167
-0.179913303678377
10404.56
12455.44
3626_0172_0532
-0.253211156190699
15667.11
20181.67
3626_0728_0748
-0.644669499986704
13300.22
25341.67
3626_0584_0410
-0.267990808422231
5694.11
7444.11
3626_0485_0839
0.197084819873056
31079.33
25519.89
3626_0184_0102
0.137663774005650
41688.11
36326.67
3626_0619_0357
0.137860817430391
46312.45
40348.33
3626_0067_0667
0.09882849014781
33776.67
30598.22
3626_0313_0945
0.205293332762579
36483.33
29712.33
3626_0764_0214
-0.0154627698123492
53948.11
54788.78
3626_0488_0840
-0.122277441460154
16592.22
18750.33
3626_0366_0604
0.0804278790150342
22126.45
20416.55
3626_0101_0335
0.0197560690505213
18136
17781.22
3626_0103_0121
-0.0107284623497432
32706.55
33059.33
3626_0254_0524
0.126876994591437
23736.89
20908.45
Total number of rows:
389359
Table truncated, full table size
18316 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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