GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM225561
Query DataSets for GSM225561
Status
Public on Aug 22, 2008
Title
SmadDKD15G
Sample type
RNA
Channel 1
Source name
Smad 1+5 double morphant
Organism
Danio rerio
Characteristics
Smad 1+5 double morphant, 1-somite embryo
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
Cy3
Label protocol
Nimblegen
Channel 2
Source name
Wildtype
Organism
Danio rerio
Characteristics
Wildtype, 1-somite embryo
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
Cy5
Label protocol
Nimblegen
Hybridization protocol
Nimblegen
Scan protocol
Nimblegen
Description
set G
Data processing
Data normalized using NimbleScan. Log2 ratios (experimental/wildtype) determined using R analysis software.
Submission date
Aug 29, 2007
Last update date
Aug 22, 2008
Contact name
Lisa J. McReynolds
E-mail(s)
lmcreyno@aecom.yu.edu
Organization name
Albert Einstein College of Medicine
Department
Developmental and Molecular Biology
Lab
Todd Evans
Street address
1300 Morris Park Ave. Chanin 501
City
Bronx
State/province
NY
ZIP/Postal code
10461
Country
USA
Platform ID
GPL5746
Series (1)
GSE8903
Comparsion of Smad1 and Smad5 Dependent Transcript Profiles in Zebrafish
Data table header descriptions
ID_REF
VALUE
log2 ratio
CH1_SIGNAL
experimental sample raw data
CH2_SIGNAL
wildtype sample raw data
Data table
ID_REF
VALUE
CH1_SIGNAL
CH2_SIGNAL
5035_0075_0565
-0.320224651800231
11318.44
15590.44
5035_0745_0643
-0.291665266662854
11164.11
14944.89
5035_0216_0442
-0.187492788685709
8196.67
9887
5035_0619_1017
-0.346277289634764
5791.11
8187.44
5035_0747_0249
-0.247736289833454
4759.89
6098
5035_0291_0311
-0.198276311618702
6525.33
7956.33
5035_0718_0604
-0.101473155647040
14052.22
15553
5035_0284_0796
-0.129893667081078
9084.67
10344.78
5035_0063_0183
-0.251975388500421
5507
7085.11
5035_0224_0342
0.414749548551884
43396.22
28663.45
5035_0440_0748
0.419822958229693
41918.89
27547.55
5035_0457_0959
0.405217640804371
41798.33
27872.45
5035_0649_0143
0.325692037492512
41562.89
30009.55
5035_0709_0297
0.396039895615290
31515.55
21209.33
5035_0050_0226
0.138224473848611
55531.11
48362.22
5035_0196_0742
0.402851040987854
38649.67
25833.89
5035_0055_0551
0.271089487327576
15236.78
11618.78
5035_0682_0404
0.192302362153341
9077.89
7489.78
5035_0508_0900
-0.131662069632727
29553
33711.78
5035_0538_0712
-0.0718448614325019
20110.45
21608.45
Total number of rows:
389307
Table truncated, full table size
18371 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
