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Sample GSM225690 Query DataSets for GSM225690
Status Public on Nov 04, 2007
Title WGACON-47
Sample type RNA
 
Source name neuropathologically normal frozen temporal cortex
Organism Homo sapiens
Characteristics GENDER_male,AGE_75,PMI_1.17,TRANSDET_WHOLE_0.451,TRANSDET_CORTEX_0.772,HYBDATE_9.7.2006,BRAINBANK_C
Extracted molecule total RNA
Extraction protocol total RNA (Qiagen Rneasy Lipid Tissue cat #cat 74804, Qiagen Rnase free dnase set- cat # 79254)
Label biotin
Label protocol RNA: per ambion manual for cat #IL1791, biotinylated cRNA created from in vitro translation targeting poly A tail, cy3 used to image RNA signal
 
Hybridization protocol RNA: Illumina Whole Genome Gene Expression Rev. F (Illumina Doc #11763837)
Scan protocol RNA: Illumina Beadstation
Description Human Cortex from neurologically normal control, Caucasian, male.
Data processing RNA: Beadstudio software v 1.5.0.34, rank invariant normalization to extract, log10 transformation before analysis
 
Submission date Aug 29, 2007
Last update date Apr 01, 2009
Contact name Amanda Myers
Organization name Miller School of Medicine, University of Miami
Department Psychiatry and Behavioral Sciences
Street address 1600 NW 10th Ave
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
 
Platform ID GPL2700
Series (2)
GSE8919 A Survey of Genetic Human Cortical Gene Expression
GSE15222 Genetic control of human brain transcript expression in Alzheimer’s disease.

Data table header descriptions
ID_REF
VALUE Signal
Detection_Score Illumina Detection Score

Data table
ID_REF VALUE Detection_Score
GI_10047089-S 15.9 0.95612903
GI_10047091-S 4873.0 1.00000000
GI_10047093-S 87.9 1.00000000
GI_10047099-S 25.9 0.99741935
GI_10047103-S 1352.6 1.00000000
GI_10047105-S 7.5 0.83225806
GI_10047121-S -0.8 0.48774194
GI_10047123-S 26.2 0.99741935
GI_10047133-A 76.9 1.00000000
GI_10047133-I 7.7 0.83483871
GI_10092578-S -3.1 0.36516129
GI_10092585-S 62.2 1.00000000
GI_10092596-S 183.4 1.00000000
GI_10092600-S 332.0 1.00000000
GI_10092602-S -3.9 0.32000000
GI_10092603-S 4.6 0.74064516
GI_10092611-A 12.8 0.92774194
GI_10092616-S 54.1 1.00000000
GI_10092618-S 930.8 1.00000000
GI_10092638-S 8.4 0.85161290

Total number of rows: 24354

Table truncated, full table size 712 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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