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GEO help: Mouse over screen elements for information. |
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Status |
Public on Nov 04, 2007 |
Title |
WGACON-49 |
Sample type |
RNA |
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Source name |
neuropathologically normal frozen temporal cortex
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Organism |
Homo sapiens |
Characteristics |
GENDER_female,AGE_72,PMI_3,TRANSDET_WHOLE_0.451,TRANSDET_CORTEX_0.778,HYBDATE_6.22.2006,BRAINBANK_C
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Extracted molecule |
total RNA |
Extraction protocol |
total RNA (Qiagen Rneasy Lipid Tissue cat #cat 74804, Qiagen Rnase free dnase set- cat # 79254)
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Label |
biotin
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Label protocol |
Illumina TotalPrep RNA Amplification Kit From Ambion, Inc. (catalogue # L-1755).
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Hybridization protocol |
RNA: per ambion manual for cat #IL1791, biotinylated cRNA created from in vitro translation targeting poly A tail, cy3 used to image RNA signal
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Scan protocol |
RNA: Illumina Beadstation
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Description |
Human Cortex from neurologically normal control, Caucasian, female.
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Data processing |
RNA: Beadstudio software v 1.5.0.34, rank invariant normalization to extract, log10 transformation before analysis
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Submission date |
Aug 29, 2007 |
Last update date |
Apr 01, 2009 |
Contact name |
Amanda Myers |
Organization name |
Miller School of Medicine, University of Miami
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Department |
Psychiatry and Behavioral Sciences
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Street address |
1600 NW 10th Ave
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City |
Miami |
State/province |
FL |
ZIP/Postal code |
33136 |
Country |
USA |
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Platform ID |
GPL2700 |
Series (2) |
GSE8919 |
A Survey of Genetic Human Cortical Gene Expression |
GSE15222 |
Genetic control of human brain transcript expression in Alzheimer’s disease. |
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Data table header descriptions |
ID_REF |
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VALUE |
Signal |
Detection_Score |
Illumina Detection Score |
Data table |
ID_REF |
VALUE |
Detection_Score |
GI_10047089-S |
2.8 |
0.61935484 |
GI_10047091-S |
3570.9 |
1.00000000 |
GI_10047093-S |
103.3 |
1.00000000 |
GI_10047099-S |
87.7 |
1.00000000 |
GI_10047103-S |
1374.9 |
1.00000000 |
GI_10047105-S |
10.6 |
0.84774194 |
GI_10047121-S |
-1.7 |
0.42193548 |
GI_10047123-S |
24.0 |
0.98064516 |
GI_10047133-A |
77.4 |
1.00000000 |
GI_10047133-I |
24.2 |
0.98064516 |
GI_10092578-S |
-8.8 |
0.20258065 |
GI_10092585-S |
64.9 |
1.00000000 |
GI_10092596-S |
192.7 |
1.00000000 |
GI_10092600-S |
655.8 |
1.00000000 |
GI_10092602-S |
0.1 |
0.51225806 |
GI_10092603-S |
-3.7 |
0.35870968 |
GI_10092611-A |
28.7 |
0.99096774 |
GI_10092616-S |
130.6 |
1.00000000 |
GI_10092618-S |
1143.2 |
1.00000000 |
GI_10092638-S |
17.8 |
0.94709677 |
Total number of rows: 24354
Table truncated, full table size 714 Kbytes.
Supplementary data files not provided |
Processed data included within Sample table |
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