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Sample GSM225947 Query DataSets for GSM225947
Status Public on Nov 04, 2007
Title WGACON-193
Sample type RNA
 
Source name neuropathologically normal frozen temporal cortex
Organism Homo sapiens
Characteristics GENDER_female,AGE_76,PMI_6,TRANSDET_WHOLE_0.466,TRANSDET_CORTEX_0.804,HYBDATE_3.9.2006,BRAINBANK_L
Extracted molecule total RNA
Extraction protocol total RNA (Qiagen Rneasy Lipid Tissue cat #cat 74804, Qiagen Rnase free dnase set- cat # 79254)
Label biotin
Label protocol RNA: per ambion manual for cat #IL1791, biotinylated cRNA created from in vitro translation targeting poly A tail, cy3 used to image RNA signal
 
Hybridization protocol RNA: Illumina Whole Genome Gene Expression Rev. F (Illumina Doc #11763837)
Scan protocol RNA: Illumina Beadstation
Description Human Cortex from neurologically normal control, Caucasian, female.
Data processing RNA: Beadstudio software v 1.5.0.34, rank invariant normalization to extract, log10 transformation before analysis
 
Submission date Aug 30, 2007
Last update date Apr 01, 2009
Contact name Amanda Myers
Organization name Miller School of Medicine, University of Miami
Department Psychiatry and Behavioral Sciences
Street address 1600 NW 10th Ave
City Miami
State/province FL
ZIP/Postal code 33136
Country USA
 
Platform ID GPL2700
Series (2)
GSE8919 A Survey of Genetic Human Cortical Gene Expression
GSE15222 Genetic control of human brain transcript expression in Alzheimer’s disease.

Data table header descriptions
ID_REF
VALUE Signal
Detection_Score Illumina Detection Score

Data table
ID_REF VALUE Detection_Score
GI_10047089-S 6.5 0.82838710
GI_10047091-S 4286.3 1.00000000
GI_10047093-S 81.6 1.00000000
GI_10047099-S 26.5 0.99870968
GI_10047103-S 1035.9 1.00000000
GI_10047105-S 12.7 0.95741935
GI_10047121-S 0.8 0.55483871
GI_10047123-S 27.8 0.99870968
GI_10047133-A 130.3 1.00000000
GI_10047133-I 9.4 0.89677419
GI_10092578-S -2.6 0.35354839
GI_10092585-S 32.7 1.00000000
GI_10092596-S 360.6 1.00000000
GI_10092600-S 574.3 1.00000000
GI_10092602-S -0.2 0.48387097
GI_10092603-S 0.4 0.52645161
GI_10092611-A 20.9 0.99483871
GI_10092616-S 145.8 1.00000000
GI_10092618-S 899.7 1.00000000
GI_10092638-S 29.7 1.00000000

Total number of rows: 24354

Table truncated, full table size 712 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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