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Sample GSM226824 Query DataSets for GSM226824
Status Public on Dec 12, 2007
Title Mouse Aorta, Control_for_Rosiglitazone_B
Sample type RNA
 
Source name Aorta from control mice
Organism Mus musculus
Characteristics Mouse: strain C57
Treatment protocol Mouse chow, vehicle for rosiglitazone.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description Gene expression data from blood vessel.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 04, 2007
Last update date Aug 28, 2018
Contact name Henry Keen
E-mail(s) henry-keen@uiowa.edu
Phone 319-335-8926
Organization name University of Iowa
Department Pharmacology
Lab Dr. Curt D. Sigmund's Laboratory
Street address 2-370 BSB
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL1261
Series (1)
GSE8949 Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1406.7 P
AFFX-BioB-M_at 2194.7 P
AFFX-BioB-3_at 1506 P
AFFX-BioC-5_at 3598.6 P
AFFX-BioC-3_at 5144.2 P
AFFX-BioDn-5_at 9175.3 P
AFFX-BioDn-3_at 16514.7 P
AFFX-CreX-5_at 62839.4 P
AFFX-CreX-3_at 68841.5 P
AFFX-DapX-5_at 3207.5 P
AFFX-DapX-M_at 6011.8 P
AFFX-DapX-3_at 7616.4 P
AFFX-LysX-5_at 525.3 P
AFFX-LysX-M_at 848.5 P
AFFX-LysX-3_at 2133.3 P
AFFX-PheX-5_at 780.5 P
AFFX-PheX-M_at 779.2 P
AFFX-PheX-3_at 750.2 P
AFFX-ThrX-5_at 843.6 P
AFFX-ThrX-M_at 890.7 P

Total number of rows: 45101

Table truncated, full table size 849 Kbytes.




Supplementary file Size Download File type/resource
GSM226824.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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