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Sample GSM226826 Query DataSets for GSM226826
Status Public on Dec 12, 2007
Title Mouse Aorta, Rosiglitazone_dose3_time2_A
Sample type RNA
 
Source name Aorta from mice at a dose of 3 mg/kg/day for 2 days
Organism Mus musculus
Characteristics Mouse: strain C57
Treatment protocol Mouse chow, contains rosiglitazone, 3 mg/kg/day, for 2 days
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description Gene expression data from blood vessel.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 04, 2007
Last update date Aug 28, 2018
Contact name Henry Keen
E-mail(s) henry-keen@uiowa.edu
Phone 319-335-8926
Organization name University of Iowa
Department Pharmacology
Lab Dr. Curt D. Sigmund's Laboratory
Street address 2-370 BSB
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL1261
Series (1)
GSE8949 Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1804.2 P
AFFX-BioB-M_at 3711.3 P
AFFX-BioB-3_at 2450.2 P
AFFX-BioC-5_at 5958 P
AFFX-BioC-3_at 7603.2 P
AFFX-BioDn-5_at 13920.7 P
AFFX-BioDn-3_at 23427.9 P
AFFX-CreX-5_at 89741 P
AFFX-CreX-3_at 103124 P
AFFX-DapX-5_at 3864.3 P
AFFX-DapX-M_at 8049.4 P
AFFX-DapX-3_at 10820.8 P
AFFX-LysX-5_at 582.5 P
AFFX-LysX-M_at 1048.4 P
AFFX-LysX-3_at 2669.5 P
AFFX-PheX-5_at 758.9 P
AFFX-PheX-M_at 838.4 P
AFFX-PheX-3_at 1306.6 P
AFFX-ThrX-5_at 849.8 P
AFFX-ThrX-M_at 1412.1 P

Total number of rows: 45101

Table truncated, full table size 848 Kbytes.




Supplementary file Size Download File type/resource
GSM226826.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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