NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM226827 Query DataSets for GSM226827
Status Public on Dec 12, 2007
Title Mouse Aorta, Rosiglitazone_dose3_time2_B
Sample type RNA
 
Source name Aorta from mice at a dose of 3 mg/kg/day for 2 days
Organism Mus musculus
Characteristics Mouse: strain C57
Treatment protocol Mouse chow, contains rosiglitazone, 3 mg/kg/day, for 2 days
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description Gene expression data from blood vessel.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 04, 2007
Last update date Aug 28, 2018
Contact name Henry Keen
E-mail(s) henry-keen@uiowa.edu
Phone 319-335-8926
Organization name University of Iowa
Department Pharmacology
Lab Dr. Curt D. Sigmund's Laboratory
Street address 2-370 BSB
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL1261
Series (1)
GSE8949 Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1516.3 P
AFFX-BioB-M_at 2946 P
AFFX-BioB-3_at 2198.6 P
AFFX-BioC-5_at 4696.9 P
AFFX-BioC-3_at 6903.9 P
AFFX-BioDn-5_at 11618.3 P
AFFX-BioDn-3_at 22858.9 P
AFFX-CreX-5_at 78497.8 P
AFFX-CreX-3_at 92603.9 P
AFFX-DapX-5_at 2757.6 P
AFFX-DapX-M_at 5778.9 P
AFFX-DapX-3_at 6732.1 P
AFFX-LysX-5_at 412.3 P
AFFX-LysX-M_at 827.9 P
AFFX-LysX-3_at 1957.2 P
AFFX-PheX-5_at 453.9 P
AFFX-PheX-M_at 775.1 P
AFFX-PheX-3_at 722.4 P
AFFX-ThrX-5_at 603 P
AFFX-ThrX-M_at 927.5 P

Total number of rows: 45101

Table truncated, full table size 849 Kbytes.




Supplementary file Size Download File type/resource
GSM226827.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap