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Sample GSM226828 Query DataSets for GSM226828
Status Public on Dec 12, 2007
Title Mouse Aorta, Rosiglitazone_dose3_time2_C
Sample type RNA
 
Source name Aorta from mice at a dose of 3 mg/kg/day for 2 days
Organism Mus musculus
Characteristics Mouse: strain C57
Treatment protocol Mouse chow, contains rosiglitazone, 3 mg/kg/day, for 2 days
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description Gene expression data from blood vessel.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 04, 2007
Last update date Aug 28, 2018
Contact name Henry Keen
E-mail(s) henry-keen@uiowa.edu
Phone 319-335-8926
Organization name University of Iowa
Department Pharmacology
Lab Dr. Curt D. Sigmund's Laboratory
Street address 2-370 BSB
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL1261
Series (1)
GSE8949 Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1471.9 P
AFFX-BioB-M_at 2125.4 P
AFFX-BioB-3_at 1863.1 P
AFFX-BioC-5_at 3421.1 P
AFFX-BioC-3_at 4565.9 P
AFFX-BioDn-5_at 9319.8 P
AFFX-BioDn-3_at 18480.4 P
AFFX-CreX-5_at 65382.2 P
AFFX-CreX-3_at 70581.4 P
AFFX-DapX-5_at 2578.9 P
AFFX-DapX-M_at 4944.2 P
AFFX-DapX-3_at 5491.5 P
AFFX-LysX-5_at 352 P
AFFX-LysX-M_at 726.5 P
AFFX-LysX-3_at 1705.1 P
AFFX-PheX-5_at 524.5 P
AFFX-PheX-M_at 549.4 P
AFFX-PheX-3_at 867.2 P
AFFX-ThrX-5_at 692.5 P
AFFX-ThrX-M_at 842 P

Total number of rows: 45101

Table truncated, full table size 851 Kbytes.




Supplementary file Size Download File type/resource
GSM226828.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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