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Sample GSM226830 Query DataSets for GSM226830
Status Public on Dec 12, 2007
Title Mouse Aorta, Rosiglitazone_dose3_time14_B
Sample type RNA
 
Source name Aorta from mice at a dose of 3 mg/kg/day for 14 days
Organism Mus musculus
Characteristics Mouse: strain C57
Treatment protocol Mouse chow, contains rosiglitazone, 3 mg/kg/day, for 14 days
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description Gene expression data from blood vessel.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 04, 2007
Last update date Aug 28, 2018
Contact name Henry Keen
E-mail(s) henry-keen@uiowa.edu
Phone 319-335-8926
Organization name University of Iowa
Department Pharmacology
Lab Dr. Curt D. Sigmund's Laboratory
Street address 2-370 BSB
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL1261
Series (1)
GSE8949 Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1927.9 P
AFFX-BioB-M_at 2472.4 P
AFFX-BioB-3_at 1676.2 P
AFFX-BioC-5_at 5292.4 P
AFFX-BioC-3_at 6778.9 P
AFFX-BioDn-5_at 10015.7 P
AFFX-BioDn-3_at 21359 P
AFFX-CreX-5_at 74470.5 P
AFFX-CreX-3_at 74524.6 P
AFFX-DapX-5_at 2288.5 P
AFFX-DapX-M_at 4816.8 P
AFFX-DapX-3_at 5683.9 P
AFFX-LysX-5_at 557.3 P
AFFX-LysX-M_at 753.5 P
AFFX-LysX-3_at 1694.8 P
AFFX-PheX-5_at 545.3 P
AFFX-PheX-M_at 660.7 P
AFFX-PheX-3_at 910 P
AFFX-ThrX-5_at 645.5 P
AFFX-ThrX-M_at 745.4 P

Total number of rows: 45101

Table truncated, full table size 853 Kbytes.




Supplementary file Size Download File type/resource
GSM226830.CEL.gz 3.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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