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Sample GSM226831 Query DataSets for GSM226831
Status Public on Dec 12, 2007
Title Mouse Aorta, Rosiglitazone_dose3_time14_C
Sample type RNA
 
Source name Aorta from mice at a dose of 3 mg/kg/day for 14 days
Organism Mus musculus
Characteristics Mouse: strain C57
Treatment protocol Mouse chow, contains rosiglitazone, 3 mg/kg/day, for 14 days
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description Gene expression data from blood vessel.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 04, 2007
Last update date Aug 28, 2018
Contact name Henry Keen
E-mail(s) henry-keen@uiowa.edu
Phone 319-335-8926
Organization name University of Iowa
Department Pharmacology
Lab Dr. Curt D. Sigmund's Laboratory
Street address 2-370 BSB
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL1261
Series (1)
GSE8949 Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1664.5 P
AFFX-BioB-M_at 2712.3 P
AFFX-BioB-3_at 1765.9 P
AFFX-BioC-5_at 4999.6 P
AFFX-BioC-3_at 6430.7 P
AFFX-BioDn-5_at 11306.8 P
AFFX-BioDn-3_at 19280.1 P
AFFX-CreX-5_at 74992 P
AFFX-CreX-3_at 83887.4 P
AFFX-DapX-5_at 2575.1 P
AFFX-DapX-M_at 5010 P
AFFX-DapX-3_at 6699.9 P
AFFX-LysX-5_at 438.9 P
AFFX-LysX-M_at 899.3 P
AFFX-LysX-3_at 1680.8 P
AFFX-PheX-5_at 628.7 P
AFFX-PheX-M_at 737.3 P
AFFX-PheX-3_at 694.2 P
AFFX-ThrX-5_at 533.3 P
AFFX-ThrX-M_at 910.5 P

Total number of rows: 45101

Table truncated, full table size 850 Kbytes.




Supplementary file Size Download File type/resource
GSM226831.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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