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Sample GSM226835 Query DataSets for GSM226835
Status Public on Dec 12, 2007
Title Mouse Aorta, Rosiglitazone_dose10_time14_A
Sample type RNA
 
Source name Aorta from mice at a dose of 10 mg/kg/day for 14 days
Organism Mus musculus
Characteristics Mouse: strain C57
Treatment protocol Mouse chow, contains rosiglitazone, 10 mg/kg/day, for 14 days
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description Gene expression data from blood vessel.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 04, 2007
Last update date Aug 28, 2018
Contact name Henry Keen
E-mail(s) henry-keen@uiowa.edu
Phone 319-335-8926
Organization name University of Iowa
Department Pharmacology
Lab Dr. Curt D. Sigmund's Laboratory
Street address 2-370 BSB
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL1261
Series (1)
GSE8949 Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1657.4 P
AFFX-BioB-M_at 2571 P
AFFX-BioB-3_at 1844.9 P
AFFX-BioC-5_at 4541.2 P
AFFX-BioC-3_at 6322.6 P
AFFX-BioDn-5_at 9445.9 P
AFFX-BioDn-3_at 18606.9 P
AFFX-CreX-5_at 64196.9 P
AFFX-CreX-3_at 69431.6 P
AFFX-DapX-5_at 2753.9 P
AFFX-DapX-M_at 5054.7 P
AFFX-DapX-3_at 5952.8 P
AFFX-LysX-5_at 318.3 P
AFFX-LysX-M_at 781.7 P
AFFX-LysX-3_at 1875.7 P
AFFX-PheX-5_at 575.6 P
AFFX-PheX-M_at 498.5 P
AFFX-PheX-3_at 845.4 P
AFFX-ThrX-5_at 685.4 P
AFFX-ThrX-M_at 904.1 P

Total number of rows: 45101

Table truncated, full table size 851 Kbytes.




Supplementary file Size Download File type/resource
GSM226835.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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