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Sample GSM226838 Query DataSets for GSM226838
Status Public on Dec 12, 2007
Title Mouse Aorta, Wildtype_for_P465L_PPARG_KI_B
Sample type RNA
Source name Aorta from wildtype mice
Organism Mus musculus
Characteristics Mouse: Wildtype littermate
Treatment protocol Mouse chow, standard.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description Gene expression data from blood vessel.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
Submission date Sep 04, 2007
Last update date Aug 28, 2018
Contact name Henry Keen
Phone 319-335-8926
Organization name University of Iowa
Department Pharmacology
Lab Dr. Curt D. Sigmund's Laboratory
Street address 2-370 BSB
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
Platform ID GPL1261
Series (1)
GSE8949 Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
Reanalyzed by GSE119085

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
AFFX-BioB-5_at 1304.6 P
AFFX-BioB-M_at 2231.9 P
AFFX-BioB-3_at 1594 P
AFFX-BioC-5_at 3675.5 P
AFFX-BioC-3_at 4818.1 P
AFFX-BioDn-5_at 8104.3 P
AFFX-BioDn-3_at 21306.3 P
AFFX-CreX-5_at 64734.1 P
AFFX-CreX-3_at 73662.7 P
AFFX-DapX-5_at 751.5 P
AFFX-DapX-M_at 1961 P
AFFX-DapX-3_at 2552.5 P
AFFX-LysX-5_at 136.8 M
AFFX-LysX-M_at 289.3 A
AFFX-LysX-3_at 707.2 P
AFFX-PheX-5_at 246.8 P
AFFX-PheX-M_at 147.6 A
AFFX-PheX-3_at 343.5 P
AFFX-ThrX-5_at 189 A
AFFX-ThrX-M_at 284.3 P

Total number of rows: 45101

Table truncated, full table size 850 Kbytes.

Supplementary file Size Download File type/resource
GSM226838.CEL.gz 3.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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