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Sample GSM226839 Query DataSets for GSM226839
Status Public on Dec 12, 2007
Title Mouse Aorta, Wildtype_for_P465L_PPARG_KI_C
Sample type RNA
Source name Aorta from wildtype mice
Organism Mus musculus
Characteristics Mouse: Wildtype littermate
Treatment protocol Mouse chow, standard.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description Gene expression data from blood vessel.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
Submission date Sep 04, 2007
Last update date Aug 28, 2018
Contact name Henry Keen
Phone 319-335-8926
Organization name University of Iowa
Department Pharmacology
Lab Dr. Curt D. Sigmund's Laboratory
Street address 2-370 BSB
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
Platform ID GPL1261
Series (1)
GSE8949 Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
Reanalyzed by GSE119085

Data table header descriptions
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
AFFX-BioB-5_at 1269 P
AFFX-BioB-M_at 2347 P
AFFX-BioB-3_at 1676.7 P
AFFX-BioC-5_at 4173.2 P
AFFX-BioC-3_at 5525.7 P
AFFX-BioDn-5_at 8560.8 P
AFFX-BioDn-3_at 19072.7 P
AFFX-CreX-5_at 64082.2 P
AFFX-CreX-3_at 74540.8 P
AFFX-DapX-5_at 561.2 P
AFFX-DapX-M_at 1606.7 P
AFFX-DapX-3_at 1963.5 P
AFFX-LysX-5_at 140.8 P
AFFX-LysX-M_at 280.4 A
AFFX-LysX-3_at 445.2 P
AFFX-PheX-5_at 159.3 A
AFFX-PheX-M_at 97.1 A
AFFX-PheX-3_at 528.6 P
AFFX-ThrX-5_at 184 A
AFFX-ThrX-M_at 347.2 P

Total number of rows: 45101

Table truncated, full table size 849 Kbytes.

Supplementary file Size Download File type/resource
GSM226839.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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