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Sample GSM226840 Query DataSets for GSM226840
Status Public on Dec 12, 2007
Title Mouse Aorta, P465L_PPARG_KI_A
Sample type RNA
 
Source name Aorta from P465L PPAR gamma
Organism Mus musculus
Characteristics Mouse: Gene-targeted, knock-in of dominant-negative P465L PPAR gamma into endogenous locus
Treatment protocol Mouse chow, standard.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description Gene expression data from blood vessel.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Sep 04, 2007
Last update date Aug 28, 2018
Contact name Henry Keen
E-mail(s) henry-keen@uiowa.edu
Phone 319-335-8926
Organization name University of Iowa
Department Pharmacology
Lab Dr. Curt D. Sigmund's Laboratory
Street address 2-370 BSB
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL1261
Series (1)
GSE8949 Gene expression changes in mouse aorta during activation of or interference with PPAR gamma signaling.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1114.3 P
AFFX-BioB-M_at 2037.8 P
AFFX-BioB-3_at 1533.7 P
AFFX-BioC-5_at 3646.2 P
AFFX-BioC-3_at 4868.1 P
AFFX-BioDn-5_at 7786.5 P
AFFX-BioDn-3_at 16910.9 P
AFFX-CreX-5_at 52812.3 P
AFFX-CreX-3_at 63755.5 P
AFFX-DapX-5_at 718.1 P
AFFX-DapX-M_at 1629.4 P
AFFX-DapX-3_at 2011.8 P
AFFX-LysX-5_at 150.4 P
AFFX-LysX-M_at 368.2 A
AFFX-LysX-3_at 630 P
AFFX-PheX-5_at 200.2 P
AFFX-PheX-M_at 195.9 P
AFFX-PheX-3_at 382.3 P
AFFX-ThrX-5_at 174.9 A
AFFX-ThrX-M_at 355.3 P

Total number of rows: 45101

Table truncated, full table size 848 Kbytes.




Supplementary file Size Download File type/resource
GSM226840.CEL.gz 3.7 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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