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Sample GSM226960 Query DataSets for GSM226960
Status Public on Sep 01, 2008
Title Mouse immune cells time 4 hrs after treatment (mcw037)
Sample type RNA
 
Source name mouse immune cells time 4 hrs after treatment
Organism Mus musculus
Characteristics BL6 NOD2 -/-
Extracted molecule total RNA
Extraction protocol See Manuscript
Label Standard Affymetrix label
Label protocol Standard Affymetrix Protocol
 
Hybridization protocol Standard Affymetrix Protocol
Scan protocol Standard Affymetrix Protocol
Description See manuscript
Data processing MAS 5.0 implemented in GCOS
 
Submission date Sep 05, 2007
Last update date Aug 28, 2018
Contact name David Finkelstein
E-mail(s) david.finkelstein@stjude.org
Phone 9014953931
Organization name St Jude Children's Research Hospital
Department Computational Biology
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL1261
Series (1)
GSE8960 The TLR2/NOD2/RICK signaling axis regulates stimulus-specific IL-10 production
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Absent vs Presence
DETECTION P-VALUE Probability that signal is noise

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 997.114 P 9.4506e-05
AFFX-BioB-M_at 1741.46 P 4.42873e-05
AFFX-BioB-3_at 1075.23 P 4.42873e-05
AFFX-BioC-5_at 3231.09 P 4.42873e-05
AFFX-BioC-3_at 3993.47 P 4.42873e-05
AFFX-BioDn-5_at 8152.28 P 4.42873e-05
AFFX-BioDn-3_at 12132.4 P 4.42873e-05
AFFX-CreX-5_at 36066 P 5.16732e-05
AFFX-CreX-3_at 38530.7 P 4.42873e-05
AFFX-DapX-5_at 199.685 P 0.000195116
AFFX-DapX-M_at 839.003 P 0.000258358
AFFX-DapX-3_at 2046.33 P 5.16732e-05
AFFX-LysX-5_at 38.5939 M 0.0629293
AFFX-LysX-M_at 127.18 P 0.00686653
AFFX-LysX-3_at 336.337 P 9.4506e-05
AFFX-PheX-5_at 78.1537 P 0.00359458
AFFX-PheX-M_at 66.4837 P 0.0166701
AFFX-PheX-3_at 235.895 P 5.16732e-05
AFFX-ThrX-5_at 80.2068 P 0.00687065
AFFX-ThrX-M_at 167.497 P 0.000662269

Total number of rows: 45101

Table truncated, full table size 1377 Kbytes.




Supplementary file Size Download File type/resource
GSM226960.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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