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Status
Public on Jan 15, 2008
Title
Liver from Nrf2 k.o. mice, biological replicate 3
Sample type
RNA
Source name
Liver, Nrf2 deficient
Organism
Mus musculus Characteristics
mouse strain: C57B/SV129
Extracted molecule
total RNA
Extraction protocol
Phenol/Chloroform extraction; RNeasy MinElute kit
Label
biotin
Label protocol
Biotinylation; IVT Labeling Kit (Affymetrix Inc., Santa Clara, CA)
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
mRNA pooled from 3 individuals
Data processing
Affymetrix GCOS 1.4 software (Affymetrix); Probability scores and fold changes were calculated using the Rosetta Resolver software (Rosetta Biosoftware, Seattle, WA).
Submission date
Sep 06, 2007
Last update date
Aug 28, 2018
Contact name
Stefan Zoller
E-mail(s)
szoller@env.ethz.ch Organization name
ETH Zurich
Department
Genetic Diversity Centre
Street address
Universitatstrasse 16
City
Zurich
ZIP/Postal code
8092
Country
Switzerland
Platform ID
GPL1261 Series (1)
GSE8969 Impaired liver regeneration in Nrf2 knockout mice caused by ROS-mediated insulin/IGF-1 resistance
Relations Reanalyzed by
GSE119085
Data table header descriptions ID_REF VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
168.211
P
0.000224668
AFFX-BioB-M_at
277.053
P
5.16732e-05
AFFX-BioB-3_at
160.955
P
4.42873e-05
AFFX-BioC-5_at
221.203
P
5.16732e-05
AFFX-BioC-3_at
262.143
P
6.02111e-05
AFFX-BioDn-5_at
1491.27
P
4.42873e-05
AFFX-BioDn-3_at
2728.77
P
4.42873e-05
AFFX-CreX-5_at
7670.66
P
5.16732e-05
AFFX-CreX-3_at
9796.88
P
4.42873e-05
AFFX-DapX-5_at
526.425
P
4.42873e-05
AFFX-DapX-M_at
889.57
P
8.14279e-05
AFFX-DapX-3_at
1047.84
P
4.42873e-05
AFFX-LysX-5_at
59.2401
P
6.02111e-05
AFFX-LysX-M_at
100.279
P
0.000146581
AFFX-LysX-3_at
180.638
P
4.42873e-05
AFFX-PheX-5_at
68.6692
P
4.42873e-05
AFFX-PheX-M_at
101.32
P
6.02111e-05
AFFX-PheX-3_at
101.863
P
0.000753643
AFFX-ThrX-5_at
105.924
P
6.02111e-05
AFFX-ThrX-M_at
143.878
P
4.42873e-05
45101 1381 Kbytes .Supplementary file Size Download File type/resource GSM227409.CEL.gz
3.5 Mb
(ftp) (http) CEL
GSM227409.CHP.gz
248.6 Kb
(ftp) (http) CHP
Processed data included within Sample table
