GEO help: Mouse over screen elements for information.
Status
Public on Jan 15, 2008
Title
Liver from Nrf2 wt mice, biological replicate 2
Sample type
RNA
Source name
Liver, wt control
Organism
Mus musculus Characteristics
mouse strain: C57B/SV129
Extracted molecule
total RNA
Extraction protocol
Phenol/Chloroform extraction; RNeasy MinElute kit
Label
biotin
Label protocol
Biotinylation; IVT Labeling Kit (Affymetrix Inc., Santa Clara, CA)
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
mRNA pooled from 3 individuals
Data processing
Affymetrix GCOS 1.4 software (Affymetrix); Probability scores and fold changes were calculated using the Rosetta Resolver software (Rosetta Biosoftware, Seattle, WA).
Submission date
Sep 06, 2007
Last update date
Aug 28, 2018
Contact name
Stefan Zoller
E-mail(s)
szoller@env.ethz.ch Organization name
ETH Zurich
Department
Genetic Diversity Centre
Street address
Universitatstrasse 16
City
Zurich
ZIP/Postal code
8092
Country
Switzerland
Platform ID
GPL1261 Series (1)
GSE8969 Impaired liver regeneration in Nrf2 knockout mice caused by ROS-mediated insulin/IGF-1 resistance
Relations Reanalyzed by
GSE119085
Data table header descriptions ID_REF VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
283.74
P
7.00668e-05
AFFX-BioB-M_at
514.139
P
4.42873e-05
AFFX-BioB-3_at
318.102
P
4.42873e-05
AFFX-BioC-5_at
354.849
P
5.16732e-05
AFFX-BioC-3_at
415.57
P
4.42873e-05
AFFX-BioDn-5_at
2499.82
P
4.42873e-05
AFFX-BioDn-3_at
4104.16
P
4.42873e-05
AFFX-CreX-5_at
10711.8
P
5.16732e-05
AFFX-CreX-3_at
12242.1
P
4.42873e-05
AFFX-DapX-5_at
436.817
P
5.16732e-05
AFFX-DapX-M_at
702.965
P
0.000126798
AFFX-DapX-3_at
793.103
P
4.42873e-05
AFFX-LysX-5_at
53.2775
P
4.42873e-05
AFFX-LysX-M_at
75.3726
P
0.000169227
AFFX-LysX-3_at
137.304
P
4.42873e-05
AFFX-PheX-5_at
46.9572
P
4.42873e-05
AFFX-PheX-M_at
64.8447
P
5.16732e-05
AFFX-PheX-3_at
76.3066
P
0.000753643
AFFX-ThrX-5_at
87.6976
P
5.16732e-05
AFFX-ThrX-M_at
92.1126
P
4.42873e-05
45101 1381 Kbytes .Supplementary file Size Download File type/resource GSM227411.CEL.gz
3.3 Mb
(ftp) (http) CEL
GSM227411.CHP.gz
251.6 Kb
(ftp) (http) CHP
Processed data included within Sample table
