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Status
Public on Jan 15, 2008
Title
Liver from Nrf2 wt mice, biological replicate 3
Sample type
RNA
Source name
Liver, wt control
Organism
Mus musculus Characteristics
mouse strain: C57B/SV129
Extracted molecule
total RNA
Extraction protocol
Phenol/Chloroform extraction; RNeasy MinElute kit
Label
biotin
Label protocol
Biotinylation; IVT Labeling Kit (Affymetrix Inc., Santa Clara, CA)
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
mRNA pooled from 3 individuals
Data processing
Affymetrix GCOS 1.4 software (Affymetrix); Probability scores and fold changes were calculated using the Rosetta Resolver software (Rosetta Biosoftware, Seattle, WA).
Submission date
Sep 06, 2007
Last update date
Aug 28, 2018
Contact name
Stefan Zoller
E-mail(s)
szoller@env.ethz.ch Organization name
ETH Zurich
Department
Genetic Diversity Centre
Street address
Universitatstrasse 16
City
Zurich
ZIP/Postal code
8092
Country
Switzerland
Platform ID
GPL1261 Series (1)
GSE8969 Impaired liver regeneration in Nrf2 knockout mice caused by ROS-mediated insulin/IGF-1 resistance
Relations Reanalyzed by
GSE119085
Data table header descriptions ID_REF VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
209.663
P
0.000753643
AFFX-BioB-M_at
356.87
P
4.42873e-05
AFFX-BioB-3_at
217.932
P
4.42873e-05
AFFX-BioC-5_at
255.596
P
5.16732e-05
AFFX-BioC-3_at
369.044
P
6.02111e-05
AFFX-BioDn-5_at
2060.94
P
4.42873e-05
AFFX-BioDn-3_at
3290.78
P
4.42873e-05
AFFX-CreX-5_at
9412.67
P
5.16732e-05
AFFX-CreX-3_at
11426.7
P
4.42873e-05
AFFX-DapX-5_at
525.411
P
4.42873e-05
AFFX-DapX-M_at
915.399
P
0.000126798
AFFX-DapX-3_at
1181.81
P
4.42873e-05
AFFX-LysX-5_at
63.46
P
4.42873e-05
AFFX-LysX-M_at
94.7258
P
0.000146581
AFFX-LysX-3_at
172.582
P
4.42873e-05
AFFX-PheX-5_at
67.8173
P
4.42873e-05
AFFX-PheX-M_at
99.9627
P
6.02111e-05
AFFX-PheX-3_at
107.284
P
0.00110197
AFFX-ThrX-5_at
116.827
P
4.42873e-05
AFFX-ThrX-M_at
147.452
P
4.42873e-05
45101 1379 Kbytes .Supplementary file Size Download File type/resource GSM227412.CEL.gz
3.5 Mb
(ftp) (http) CEL
GSM227412.CHP.gz
247.9 Kb
(ftp) (http) CHP
Processed data included within Sample table
