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Sample GSM228787 Query DataSets for GSM228787
Status Public on Nov 19, 2007
Title Normal liver_WT-rep2
Sample type RNA
Source name Normal liver of WT
Organism Mus musculus
Characteristics C57BL/6
Age: 20 months
Growth protocol Mice were bred and housed in the Clinical Mouse Institute, ICS (Strasbourg, France) according to guidelines in compliance with the European legislation on care and use of laboratory anaimals.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the RNeasy Kit from QIAGEN.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse 430 2.0 Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner GCS3000
Description Gene expression data from livers of adult wild-type mice
Data processing The data were analyzed with Affymetrix GCOS software version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Submission date Sep 11, 2007
Last update date Aug 28, 2018
Contact name RĂ©gine Losson
Organization name IGBMC
Street address 1 rue Laurent Fries
ZIP/Postal code 67404
Country France
Platform ID GPL1261
Series (1)
GSE9012 Expression data from spontaneous liver tumors of Trim24/TIF1a-null mice.
Reanalyzed by GSE119085

Data table header descriptions
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)

Data table
AFFX-BioB-5_at 76.6837 P 0.0044838
AFFX-BioB-M_at 117.398 P 0.000389797
AFFX-BioB-3_at 79.9047 P 0.000662269
AFFX-BioC-5_at 201.094 P 6.02111e-05
AFFX-BioC-3_at 207.202 P 0.000146581
AFFX-BioDn-5_at 283.658 P 0.000195116
AFFX-BioDn-3_at 966.441 P 9.4506e-05
AFFX-CreX-5_at 3279.39 P 7.00668e-05
AFFX-CreX-3_at 4156.27 P 4.42873e-05
AFFX-DapX-5_at 1.48962 A 0.544587
AFFX-DapX-M_at 15.8618 A 0.139482
AFFX-DapX-3_at 2.03203 A 0.910522
AFFX-LysX-5_at 0.922493 A 0.699394
AFFX-LysX-M_at 1.63091 A 0.772364
AFFX-LysX-3_at 5.93133 A 0.195246
AFFX-PheX-5_at 1.02644 A 0.883887
AFFX-PheX-M_at 0.583911 A 0.986196
AFFX-PheX-3_at 7.50333 A 0.440646
AFFX-ThrX-5_at 7.50349 A 0.354453
AFFX-ThrX-M_at 10.4703 A 0.287743

Total number of rows: 45101

Table truncated, full table size 1366 Kbytes.

Supplementary file Size Download File type/resource
GSM228787.CEL.gz 6.1 Mb (ftp)(http) CEL
GSM228787.CHP.gz 11.2 Mb (ftp)(http) CHP
GSM228787.EXP.gz 506 b (ftp)(http) EXP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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