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Sample GSM229790 Query DataSets for GSM229790
Status Public on Aug 24, 2011
Title Dap12-ko microglia 2_8
Sample type RNA
 
Source name mouse primary microglial cells
Organism Mus musculus
Characteristics C57BL6 Dap12-deficient
Extracted molecule total RNA
Extraction protocol Trizol and RNeasy
Label biotin
Label protocol Affymetrix two-cycle labelling kit
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description Dap12-ko
Data processing GCOS scaling to target intensity of 100
 
Submission date Sep 14, 2007
Last update date Aug 24, 2011
Contact name Anna Kiialainen
E-mail(s) Anna.Kiialainen@medsci.uu.se
Phone +46186114951
Organization name Uppsala University
Department Deapartment of Medical Sciences
Street address University Hospital, Entrance 70
City Uppsala
ZIP/Postal code 75185
Country Sweden
 
Platform ID GPL1261
Series (2)
GSE9043 Dap12 microglia
GSE9083 Genome-wide expression analysis of Dap12 (Tyrobp)-deficient mouse brain and microglial cells

Data table header descriptions
ID_REF
VALUE expression value
ABS_CALL Affymetrix detection call
DETECTION P-VALUE Affymetrix detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 102.371 P 0.000509415
AFFX-BioB-M_at 154.003 P 9.4506e-05
AFFX-BioB-3_at 88.5214 P 5.16732e-05
AFFX-BioC-5_at 384.018 P 5.16732e-05
AFFX-BioC-3_at 475.672 P 4.42873e-05
AFFX-BioDn-5_at 772.626 P 5.16732e-05
AFFX-BioDn-3_at 1421.38 P 4.42873e-05
AFFX-CreX-5_at 4728.62 P 5.16732e-05
AFFX-CreX-3_at 5446.52 P 4.42873e-05
AFFX-DapX-5_at 11727.2 P 4.42873e-05
AFFX-DapX-M_at 10479.3 P 4.42873e-05
AFFX-DapX-3_at 9422.91 P 4.42873e-05
AFFX-LysX-5_at 9993.1 P 4.42873e-05
AFFX-LysX-M_at 10351.8 P 4.42873e-05
AFFX-LysX-3_at 11765.1 P 4.42873e-05
AFFX-PheX-5_at 10407.5 P 4.42873e-05
AFFX-PheX-M_at 11287.8 P 4.42873e-05
AFFX-PheX-3_at 10396 P 4.42873e-05
AFFX-ThrX-5_at 8529.08 P 5.16732e-05
AFFX-ThrX-M_at 11284.5 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1377 Kbytes.




Supplementary file Size Download File type/resource
GSM229790.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM229790.CHP.gz 247.5 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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