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Sample GSM229791 Query DataSets for GSM229791
Status Public on Aug 24, 2011
Title Dap12-ko microglia 3_11
Sample type RNA
 
Source name mouse primary microglia
Organism Mus musculus
Characteristics C57BL6 Dap12-deficient
Extracted molecule total RNA
Extraction protocol Trizol and RNeasy
Label biotin
Label protocol Affymetrix two-cycle labelling kit
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description Dap12-ko
Data processing GCOS scaling to target intensity of 100
 
Submission date Sep 14, 2007
Last update date Aug 24, 2011
Contact name Anna Kiialainen
E-mail(s) Anna.Kiialainen@medsci.uu.se
Phone +46186114951
Organization name Uppsala University
Department Deapartment of Medical Sciences
Street address University Hospital, Entrance 70
City Uppsala
ZIP/Postal code 75185
Country Sweden
 
Platform ID GPL1261
Series (2)
GSE9043 Dap12 microglia
GSE9083 Genome-wide expression analysis of Dap12 (Tyrobp)-deficient mouse brain and microglial cells

Data table header descriptions
ID_REF
VALUE expression value
ABS_CALL Affymetrix detection call
DETECTION P-VALUE Affymetrix detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 85.1707 P 0.0012475
AFFX-BioB-M_at 158.248 P 0.00010954
AFFX-BioB-3_at 85.4143 P 5.16732e-05
AFFX-BioC-5_at 308.229 P 6.02111e-05
AFFX-BioC-3_at 346.022 P 4.42873e-05
AFFX-BioDn-5_at 564.884 P 4.42873e-05
AFFX-BioDn-3_at 1083.88 P 4.42873e-05
AFFX-CreX-5_at 4195.13 P 5.16732e-05
AFFX-CreX-3_at 5219.9 P 4.42873e-05
AFFX-DapX-5_at 7596.22 P 4.42873e-05
AFFX-DapX-M_at 9409.88 P 4.42873e-05
AFFX-DapX-3_at 9392.32 P 4.42873e-05
AFFX-LysX-5_at 4917.4 P 4.42873e-05
AFFX-LysX-M_at 8647.36 P 4.42873e-05
AFFX-LysX-3_at 9279.16 P 4.42873e-05
AFFX-PheX-5_at 7397.23 P 4.42873e-05
AFFX-PheX-M_at 9633.22 P 4.42873e-05
AFFX-PheX-3_at 9320.28 P 4.42873e-05
AFFX-ThrX-5_at 3160.72 P 5.16732e-05
AFFX-ThrX-M_at 8417.17 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1378 Kbytes.




Supplementary file Size Download File type/resource
GSM229791.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM229791.CHP.gz 248.8 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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