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Sample GSM229976 Query DataSets for GSM229976
Status Public on Aug 24, 2011
Title Dap12-ko 68
Sample type RNA
Source name 1 month old Dap12-deficient mouse brain
Organism Mus musculus
Characteristics middle brain from 1 month old Dap12-deficient C57BL6 mouse
Extracted molecule total RNA
Extraction protocol Trizol + RNeasy
Label biotin
Label protocol Affymetrix one-cycle
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description Dap12-ko
Data processing GCOS scaling to target intensity of 100
Submission date Sep 17, 2007
Last update date Aug 24, 2011
Contact name Anna Kiialainen
Phone +46186114951
Organization name Uppsala University
Department Deapartment of Medical Sciences
Street address University Hospital, Entrance 70
City Uppsala
ZIP/Postal code 75185
Country Sweden
Platform ID GPL1261
Series (2)
GSE9061 Dap12-deficient mouse brain (1 month)
GSE9083 Genome-wide expression analysis of Dap12 (Tyrobp)-deficient mouse brain and microglial cells

Data table header descriptions
VALUE expression value
ABS_CALL Affymetrix detection call
DETECTION P-VALUE Affymetrix detection p-value

Data table
AFFX-BioB-5_at 190.975 P 0.000195116
AFFX-BioB-M_at 364.771 P 0.000146581
AFFX-BioB-3_at 307.999 P 5.16732e-05
AFFX-BioC-5_at 1201.9 P 4.42873e-05
AFFX-BioC-3_at 1342.35 P 4.42873e-05
AFFX-BioDn-5_at 3027.43 P 4.42873e-05
AFFX-BioDn-3_at 4165.11 P 4.42873e-05
AFFX-CreX-5_at 9668.01 P 5.16732e-05
AFFX-CreX-3_at 10634.3 P 5.16732e-05
AFFX-DapX-5_at 20742.1 P 4.42873e-05
AFFX-DapX-M_at 22611.5 P 4.42873e-05
AFFX-DapX-3_at 26907.2 P 4.42873e-05
AFFX-LysX-5_at 4461.58 P 4.42873e-05
AFFX-LysX-M_at 7420.12 P 4.42873e-05
AFFX-LysX-3_at 12193.3 P 4.42873e-05
AFFX-PheX-5_at 8784.46 P 4.42873e-05
AFFX-PheX-M_at 11081.5 P 4.42873e-05
AFFX-PheX-3_at 7191.95 P 4.42873e-05
AFFX-ThrX-5_at 11609.7 P 4.42873e-05
AFFX-ThrX-M_at 12292.2 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1367 Kbytes.

Supplementary file Size Download File type/resource
GSM229976.CEL.gz 5.8 Mb (ftp)(http) CEL
GSM229976.CHP.gz 10.5 Mb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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