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Sample GSM229977 Query DataSets for GSM229977
Status Public on Aug 24, 2011
Title Dap12-ko 67
Sample type RNA
Source name 1 month old Dap12-deficient mouse brain
Organism Mus musculus
Characteristics midbrain of Dap12-deficient C57BL6 mouse
Extracted molecule total RNA
Extraction protocol Trizol + RNeasy
Label biotin
Label protocol Affymetrix one-cycle
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description Dap12-ko
Data processing GCOS scaling to target intensity of 100
Submission date Sep 17, 2007
Last update date Aug 24, 2011
Contact name Anna Kiialainen
Phone +46186114951
Organization name Uppsala University
Department Deapartment of Medical Sciences
Street address University Hospital, Entrance 70
City Uppsala
ZIP/Postal code 75185
Country Sweden
Platform ID GPL1261
Series (2)
GSE9061 Dap12-deficient mouse brain (1 month)
GSE9083 Genome-wide expression analysis of Dap12 (Tyrobp)-deficient mouse brain and microglial cells

Data table header descriptions
VALUE expression value
ABS_CALL Affymetrix detection call
DETECTION P-VALUE Affymetrix detection p-value

Data table
AFFX-BioB-5_at 448.08 P 0.00010954
AFFX-BioB-M_at 795.761 P 6.02111e-05
AFFX-BioB-3_at 707.815 P 4.42873e-05
AFFX-BioC-5_at 2569.74 P 4.42873e-05
AFFX-BioC-3_at 2452.57 P 4.42873e-05
AFFX-BioDn-5_at 5819.87 P 4.42873e-05
AFFX-BioDn-3_at 7411.38 P 4.42873e-05
AFFX-CreX-5_at 17875.1 P 4.42873e-05
AFFX-CreX-3_at 21148 P 4.42873e-05
AFFX-DapX-5_at 32343.9 P 4.42873e-05
AFFX-DapX-M_at 37059.2 P 4.42873e-05
AFFX-DapX-3_at 45160 P 4.42873e-05
AFFX-LysX-5_at 5263.47 P 4.42873e-05
AFFX-LysX-M_at 8416.93 P 4.42873e-05
AFFX-LysX-3_at 17022.8 P 4.42873e-05
AFFX-PheX-5_at 10232.9 P 4.42873e-05
AFFX-PheX-M_at 13018.6 P 4.42873e-05
AFFX-PheX-3_at 10252.2 P 4.42873e-05
AFFX-ThrX-5_at 14209.6 P 4.42873e-05
AFFX-ThrX-M_at 15587.5 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1363 Kbytes.

Supplementary file Size Download File type/resource
GSM229977.CEL.gz 5.6 Mb (ftp)(http) CEL
GSM229977.CHP.gz 10.2 Mb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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