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Sample GSM229979 Query DataSets for GSM229979
Status Public on Aug 24, 2011
Title Dap12-het 75
Sample type RNA
Source name 1 month old Dap12-deficient mouse brain
Organism Mus musculus
Characteristics midbrain of 1 month old Dap12-heterozygous C57BL6 mouse
Extracted molecule total RNA
Extraction protocol Trizol + RNeasy
Label biotin
Label protocol Affymetrix one-cycle
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description Dap12-het
Data processing GCOS scaling to target intensity of 100
Submission date Sep 17, 2007
Last update date Aug 24, 2011
Contact name Anna Kiialainen
Phone +46186114951
Organization name Uppsala University
Department Deapartment of Medical Sciences
Street address University Hospital, Entrance 70
City Uppsala
ZIP/Postal code 75185
Country Sweden
Platform ID GPL1261
Series (2)
GSE9061 Dap12-deficient mouse brain (1 month)
GSE9083 Genome-wide expression analysis of Dap12 (Tyrobp)-deficient mouse brain and microglial cells

Data table header descriptions
VALUE expression value
ABS_CALL Affymetrix detection call
DETECTION P-VALUE Affymetrix detection p-value

Data table
AFFX-BioB-5_at 70.0701 P 0.000445901
AFFX-BioB-M_at 121.133 P 4.42873e-05
AFFX-BioB-3_at 75.6136 P 0.000195116
AFFX-BioC-5_at 233.414 P 5.16732e-05
AFFX-BioC-3_at 301.208 P 5.16732e-05
AFFX-BioDn-5_at 416.294 P 4.42873e-05
AFFX-BioDn-3_at 915.672 P 6.02111e-05
AFFX-CreX-5_at 2655.22 P 4.42873e-05
AFFX-CreX-3_at 3617.79 P 4.42873e-05
AFFX-DapX-5_at 6369.25 P 4.42873e-05
AFFX-DapX-M_at 6481.66 P 4.42873e-05
AFFX-DapX-3_at 7381.62 P 4.42873e-05
AFFX-LysX-5_at 3250.5 P 4.42873e-05
AFFX-LysX-M_at 5083.37 P 4.42873e-05
AFFX-LysX-3_at 5020.6 P 4.42873e-05
AFFX-PheX-5_at 3717.25 P 4.42873e-05
AFFX-PheX-M_at 5231.55 P 4.42873e-05
AFFX-PheX-3_at 4047.6 P 4.42873e-05
AFFX-ThrX-5_at 3503.21 P 5.16732e-05
AFFX-ThrX-M_at 4966.78 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1388 Kbytes.

Supplementary file Size Download File type/resource
GSM229979.CEL.gz 6.0 Mb (ftp)(http) CEL
GSM229979.CHP.gz 11.0 Mb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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