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Sample GSM229987 Query DataSets for GSM229987
Status Public on Aug 24, 2011
Title Dap12-het 81
Sample type RNA
Source name 1 month old Dap12-deficient mouse brain
Organism Mus musculus
Characteristics midbrain of 1 month old Dap12-heterozygous C57BL6 mouse
Extracted molecule total RNA
Extraction protocol Trizol + RNeasy
Label biotin
Label protocol Affymetrix one-cycle
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description Dap12-het
Data processing GCOS scaling to target intensity of 100
Submission date Sep 17, 2007
Last update date Aug 24, 2011
Contact name Anna Kiialainen
Phone +46186114951
Organization name Uppsala University
Department Deapartment of Medical Sciences
Street address University Hospital, Entrance 70
City Uppsala
ZIP/Postal code 75185
Country Sweden
Platform ID GPL1261
Series (2)
GSE9061 Dap12-deficient mouse brain (1 month)
GSE9083 Genome-wide expression analysis of Dap12 (Tyrobp)-deficient mouse brain and microglial cells

Data table header descriptions
VALUE expression value
ABS_CALL Affymetrix detection call
DETECTION P-VALUE Affymetrix detection p-value

Data table
AFFX-BioB-5_at 76.4785 P 0.000258358
AFFX-BioB-M_at 127.951 P 4.42873e-05
AFFX-BioB-3_at 82.9067 P 6.02111e-05
AFFX-BioC-5_at 237.95 P 5.16732e-05
AFFX-BioC-3_at 315.838 P 4.42873e-05
AFFX-BioDn-5_at 537.818 P 4.42873e-05
AFFX-BioDn-3_at 878.965 P 5.16732e-05
AFFX-CreX-5_at 2959.31 P 4.42873e-05
AFFX-CreX-3_at 3823.77 P 4.42873e-05
AFFX-DapX-5_at 6528.84 P 4.42873e-05
AFFX-DapX-M_at 6893.93 P 4.42873e-05
AFFX-DapX-3_at 7668.97 P 4.42873e-05
AFFX-LysX-5_at 3587.47 P 4.42873e-05
AFFX-LysX-M_at 6005.89 P 4.42873e-05
AFFX-LysX-3_at 5321.82 P 4.42873e-05
AFFX-PheX-5_at 4087.28 P 4.42873e-05
AFFX-PheX-M_at 6102.33 P 4.42873e-05
AFFX-PheX-3_at 4566.04 P 4.42873e-05
AFFX-ThrX-5_at 4206.24 P 4.42873e-05
AFFX-ThrX-M_at 5533.67 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1393 Kbytes.

Supplementary file Size Download File type/resource
GSM229987.CEL.gz 6.0 Mb (ftp)(http) CEL
GSM229987.CHP.gz 10.9 Mb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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