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Sample GSM229988 Query DataSets for GSM229988
Status Public on Aug 24, 2011
Title Dap12-ko Ko1
Sample type RNA
Source name 1 month old Dap12-deficient mouse brain
Organism Mus musculus
Characteristics midbrain of 1 month old Dap12-deficient mouse brain
Extracted molecule total RNA
Extraction protocol Trizol + RNeasy
Label biotin
Label protocol Affymetrix one-cycle
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description Dap12-ko
Data processing GCOS scaling to target intensity of 100
Submission date Sep 17, 2007
Last update date Aug 24, 2011
Contact name Anna Kiialainen
Phone +46186114951
Organization name Uppsala University
Department Deapartment of Medical Sciences
Street address University Hospital, Entrance 70
City Uppsala
ZIP/Postal code 75185
Country Sweden
Platform ID GPL1261
Series (2)
GSE9061 Dap12-deficient mouse brain (1 month)
GSE9083 Genome-wide expression analysis of Dap12 (Tyrobp)-deficient mouse brain and microglial cells

Data table header descriptions
VALUE expression value
ABS_CALL Affymetrix detection call
DETECTION P-VALUE Affymetrix detection p-value

Data table
AFFX-BioB-5_at 299.579 P 9.4506e-05
AFFX-BioB-M_at 463.985 P 4.42873e-05
AFFX-BioB-3_at 289.904 P 4.42873e-05
AFFX-BioC-5_at 1029.9 P 5.16732e-05
AFFX-BioC-3_at 1041.38 P 4.42873e-05
AFFX-BioDn-5_at 1768.46 P 4.42873e-05
AFFX-BioDn-3_at 3658.25 P 4.42873e-05
AFFX-CreX-5_at 8945.52 P 5.16732e-05
AFFX-CreX-3_at 10463.5 P 4.42873e-05
AFFX-DapX-5_at 16283.5 P 4.42873e-05
AFFX-DapX-M_at 14989 P 4.42873e-05
AFFX-DapX-3_at 15415.3 P 4.42873e-05
AFFX-LysX-5_at 9972.47 P 4.42873e-05
AFFX-LysX-M_at 13434.1 P 4.42873e-05
AFFX-LysX-3_at 13551.9 P 4.42873e-05
AFFX-PheX-5_at 12057 P 4.42873e-05
AFFX-PheX-M_at 14500.7 P 4.42873e-05
AFFX-PheX-3_at 12320.8 P 4.42873e-05
AFFX-ThrX-5_at 13415.1 P 4.42873e-05
AFFX-ThrX-M_at 13992.9 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1379 Kbytes.

Supplementary file Size Download File type/resource
GSM229988.CEL.gz 5.9 Mb (ftp)(http) CEL
GSM229988.CHP.gz 10.8 Mb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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